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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
SSEIQRHITEFISSWQNHPIVQVSADVENRKTAQLLHADTPRLVTWDAGLCTSFKIVPIVPAQVPQDVLAYTFFTSSYAI
QSPFPEAAVSRIVVHTRWASNVDFDRDSSVIMAPPTENNIHLFKQLLNTETLSVRGANPLMFRANVLHMLLEFVLDNLYL
NRHTGFSQDHTPFTEGANLRSLPGPDAEKWYSIMYPTRMGTPNVSKICNFVASCVRNRVGRFDRAQMMNGAMSEWVDVFE
TSDALTVSIRGRWMARLARMNINPTEIEWALTECAQGYVTVTSPYAPSVNRLMPYRISNAERQISQIIRVMNIGNNATVI
QPVLQDISVLLQRISPLQIDPTIISNTMSTVSELSPASSILGKLRPSNSDFSSFRVALAGWLYNGVVTTVIDDSSYPKDG
GSVTSLENLWDFFILALALPLTTDPCAPVKAFMTLANMMVGFETIPMDNQIYTQSRRASAFSTPHTWPRCFMNIQLISPI
DAPILRQWAEIIHRYWPNPSQIRYGTPNVFGSANLFTPPEVLLLPIDHQPANVTTPTLDFTNELTNWRARVCELMKNLVD
NQRYQPGWTQSLVSSMRGTLGKLKLIKSMTPMYLQQLAPVELAVIAPMLPFPPFQVPYVRLDRDRVPTMVGVTRQSRDTI
TQPALSLSTTNTTVGVPLALDARAITVALLSGKYPPDLVTNVWYADAIYPMYADTEVFSNLQRDVITCEAVQTLVTLVAQ
ISETQYPVDRYLDWIPSLRASAATAATFAEWVNTSMKTAFDLSDMLLEPLLSGDPRMTQLAIQYQQYNGRTFNVIPEMPG
SVIADCVQLTAEVFNHEYNLFGIARGDIIIGRVQSTHLWSPLAPPPDLVFDRDTPGVHIFGRDCRISFGMNGAAPMIRDE
TGMMVPFEGNWIFPLALWQMNTRYFNQQFDAWIKTGELRIRIEMGAYPYMLHYYDPRQYANAWNLTSAWLEEITPTSIPS
VPFMVPISSDHDISSAPAVQYIISTEYNDRSLFCTNSSSPQTIAGPDKHIPVERYNILTNPDAPPTQIQLPEVVDLYNVV
TRYAYETPPITAVVMGVP

The query sequence (length=1058) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 1ej6:C 1221 1058 0.9905 0.8583 0.9905 0.0 7elh:G, 7elh:K, 7elh:m, 7yed:A, 7yed:E, 7yed:B, 7yed:C, 7yed:a, 7yed:b, 7yed:c, 7yed:d, 7yed:e, 7yev:A, 7yev:B, 7yev:C, 7yev:a, 7yev:b, 7yev:c, 7yev:d, 7yev:e, 7yez:b, 7yf0:B, 7yf0:C, 7yf0:a, 7yf0:b, 7yf0:c, 7yf0:d, 7yf0:e, 7yfe:B, 7yfe:C, 7yfe:a, 7yfe:b, 7yfe:c, 7yfe:d, 7yfe:e
2 8fjl:D 1138 1064 0.3459 0.3216 0.3440 0.0 8fjk:E, 8fjk:G, 8fjk:I, 8fjk:K, 8fjl:E, 8fjl:G, 8fjl:I, 8fjl:K, 6m99:C
3 2b69:A 312 214 0.0435 0.1474 0.2150 2.3 4gll:A, 4gll:B
4 3oja:B 534 91 0.0208 0.0412 0.2418 3.3
5 4bd0:A 261 53 0.0180 0.0728 0.3585 6.5 5a92:A, 5a93:A, 4bd1:A, 4c3q:A, 6c79:A, 5g18:A, 1iyo:A, 1iyp:A, 1iyq:A, 1iys:A, 5kmw:A, 5ksc:A, 4x69:A, 4x69:B, 2zq8:A, 2zq9:A, 2zqa:A, 2zqc:A, 2zqd:A
6 5br4:A 385 47 0.0132 0.0364 0.2979 7.1 2bi4:A, 2bi4:B, 2bl4:A, 2bl4:B, 5br4:B, 7qlg:AAA, 7qlg:BBB, 7qlq:AAA, 7qlq:BBB, 7qls:AAA, 7qls:BBB, 7qnf:AAA, 7qnf:BBB, 7qnh:AAA, 7qnh:BBB, 7qnj:AAA, 7qnj:BBB, 7r0p:AAA, 7r0p:BBB, 7r3d:AAA, 7r3d:BBB, 7r5t:AAA, 7r5t:BBB, 1rrm:A, 1rrm:B
7 3j7a:X 96 34 0.0113 0.1250 0.3529 8.0 3jbn:X, 3jbo:X, 3jbp:X, 6okk:X, 8tpu:SX

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218