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BioLiP
>protein
SSEIAALKQEIAALKKEIAALKAGASVQTAATSWGTVPSIRVYTANNGKITERCWDGKGWYTGAFNEPGDNVSVTSWLVG
SAIHIRVYASTGTTTTEWCWDGNGWTKGAYTA

The query sequence (length=112) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6f37:A 113 112 1.0000 0.9912 1.0000 1.73e-77 5ajb:A, 5ajb:B, 5ajb:C, 5ajc:A, 5ajc:B, 5ajc:C, 7alf:A, 7alf:B, 7alg:A, 7alg:B, 2bs5:A, 2bs6:A, 2bs6:B, 2bs6:C, 8c9y:A, 8c9z:A, 8cf6:A, 8cf6:C, 8cf6:B, 8cf7:A, 8cf7:B, 8cf7:C, 8cf7:D, 8cf7:E, 8cf7:F, 6f37:B, 6f7w:A, 6f7w:B, 6f7w:C, 6f7x:A, 6f7x:C, 6f7x:B, 6gl5:A, 6gl5:B, 6gl5:C, 4i6s:A, 4i6s:B, 4i6s:C, 5o7u:A, 5o7u:B, 5o7w:A, 5o7w:B, 7p2h:A, 7p2h:B, 7p2i:A, 7p2i:C, 7p2i:B, 7p2j:A, 7p2j:B, 7pr5:A, 7pr5:C, 7pr5:F, 7pr5:B, 7pr5:D, 7pr5:E, 7pr5:G, 7pr5:I, 7pr5:H, 7pr5:J, 7pr5:L, 7pr5:K, 8q6a:A, 8q6b:A, 8q6c:A, 6s99:A, 6s99:C, 6s99:B, 6s99:D, 6s99:F, 6s99:E, 6sth:A, 6sth:B, 6t99:A, 6t99:B, 6t99:C, 6t99:D, 6t99:E, 6t99:F, 6t99:G, 6t99:H, 6t99:I, 6t9a:A, 6t9a:B, 6t9a:C, 6t9b:A, 6t9b:B, 6t9b:C, 6t9b:D, 6t9b:E, 6t9b:F, 6t9b:G, 6t9b:H, 6t9b:I, 6y0x:B, 6y0x:F, 6y0x:C, 6y0x:D, 6y0x:E, 6y0x:A, 6z5g:A, 6z5m:A, 6z5p:A, 6z5p:B, 6z5q:A, 6z5q:B, 6z5w:A, 6z5x:A, 6z5z:A, 6z60:A, 6z62:A, 6zuk:A, 6zuk:B, 6zuk:C, 6zul:A, 6zul:B, 6zul:C, 6zul:D, 6zul:E, 6zul:F, 6zum:A
2 7e7v:A 271 88 0.7589 0.3137 0.9659 1.20e-55 2bt9:A, 2bt9:B, 2bt9:C, 4csd:A, 4csd:B, 7e7n:A, 7e7r:A, 7e7r:B, 7e7t:A, 7e7t:B, 7e7u:A, 7e7u:B, 7e7v:B, 7e7v:C, 5o7v:A, 5o7v:B, 6stz:A, 6stz:D, 6stz:B, 6stz:F, 6stz:C, 6stz:E, 6su0:A, 6su0:I, 6su0:K, 6su0:C, 6su0:B, 6su0:J, 6su0:D, 6su0:F, 6su0:M, 6su0:E, 6su0:N, 6su0:O, 3zi8:A, 6zuk:D, 6zuk:E
3 7e7v:A 271 85 0.7500 0.3100 0.9882 8.47e-55 2bt9:A, 2bt9:B, 2bt9:C, 4csd:A, 4csd:B, 7e7n:A, 7e7r:A, 7e7r:B, 7e7t:A, 7e7t:B, 7e7u:A, 7e7u:B, 7e7v:B, 7e7v:C, 5o7v:A, 5o7v:B, 6stz:A, 6stz:D, 6stz:B, 6stz:F, 6stz:C, 6stz:E, 6su0:A, 6su0:I, 6su0:K, 6su0:C, 6su0:B, 6su0:J, 6su0:D, 6su0:F, 6su0:M, 6su0:E, 6su0:N, 6su0:O, 3zi8:A, 6zuk:D, 6zuk:E
4 7e7v:A 271 85 0.7321 0.3026 0.9647 3.30e-53 2bt9:A, 2bt9:B, 2bt9:C, 4csd:A, 4csd:B, 7e7n:A, 7e7r:A, 7e7r:B, 7e7t:A, 7e7t:B, 7e7u:A, 7e7u:B, 7e7v:B, 7e7v:C, 5o7v:A, 5o7v:B, 6stz:A, 6stz:D, 6stz:B, 6stz:F, 6stz:C, 6stz:E, 6su0:A, 6su0:I, 6su0:K, 6su0:C, 6su0:B, 6su0:J, 6su0:D, 6su0:F, 6su0:M, 6su0:E, 6su0:N, 6su0:O, 3zi8:A, 6zuk:D, 6zuk:E
5 6zfc:A 87 85 0.5804 0.7471 0.7647 7.31e-45 6zfc:B, 6zfc:C, 6zfc:D, 6zfc:E, 6zfc:F, 3zw0:C, 3zw1:A, 3zw1:B, 3zw2:A, 3zw2:B, 3zw2:C, 3zwe:A, 3zwe:B, 3zwe:C, 3zzv:A, 3zzv:B, 3zzv:C
6 6htn:A 143 79 0.3214 0.2517 0.4557 2.29e-12 6htn:B, 6htn:C, 6htn:D, 6htn:E, 6htn:F
7 6htn:A 143 105 0.3929 0.3077 0.4190 2.57e-12 6htn:B, 6htn:C, 6htn:D, 6htn:E, 6htn:F
8 6htn:A 143 29 0.1339 0.1049 0.5172 0.005 6htn:B, 6htn:C, 6htn:D, 6htn:E, 6htn:F
9 6trv:AAA 294 97 0.3839 0.1463 0.4433 3.72e-10 6trv:BBB
10 6trv:AAA 294 69 0.2768 0.1054 0.4493 6.07e-07 6trv:BBB
11 6trv:AAA 294 83 0.2679 0.1020 0.3614 0.035 6trv:BBB
12 6z6c:BBB 317 103 0.3304 0.1167 0.3592 2.52e-05 4agi:A, 4agi:B, 4agi:C, 4agi:D, 4agt:A, 4agt:B, 4ah4:A, 4ah4:B, 4aha:A, 4aha:B, 4c1y:A, 4c1y:B, 4c1y:C, 4c1y:D, 4d4u:A, 4d4u:B, 4d52:A, 4d52:B, 4d52:C, 4d52:D, 6z6c:AAA
13 5eo8:A 311 103 0.3304 0.1190 0.3592 2.58e-05 5eo7:A, 5eo7:B, 5eo7:C, 5h47:A, 5h47:B, 5h47:C, 5h47:J, 5h47:D, 5h47:E, 5h47:F, 5h47:G, 5h47:K, 5h47:H, 5h47:I, 5h47:L
14 5mxc:A 313 103 0.3214 0.1150 0.3495 5.40e-05 6gke:A, 1iub:A, 1iuc:A, 1ofz:A, 1ofz:B
15 5mxc:A 313 53 0.1964 0.0703 0.4151 8.61e-05 6gke:A, 1iub:A, 1iuc:A, 1ofz:A, 1ofz:B
16 5mxc:A 313 100 0.2768 0.0990 0.3100 0.024 6gke:A, 1iub:A, 1iuc:A, 1ofz:A, 1ofz:B
17 5mxc:A 313 83 0.2500 0.0895 0.3373 0.033 6gke:A, 1iub:A, 1iuc:A, 1ofz:A, 1ofz:B
18 4dzl:F 32 20 0.1518 0.5312 0.8500 0.002 4dzl:I, 4dzl:E, 4dzl:H, 4dzl:C, 4dzl:J, 4dzl:K
19 4dzl:F 32 22 0.1429 0.5000 0.7273 0.015 4dzl:I, 4dzl:E, 4dzl:H, 4dzl:C, 4dzl:J, 4dzl:K
20 6i1j:A 30 20 0.1429 0.5333 0.8000 0.047
21 4etp:B 287 24 0.1429 0.0557 0.6667 0.048
22 4etp:B 287 17 0.1161 0.0453 0.7647 0.53
23 4etp:A 379 19 0.1339 0.0396 0.7895 0.061 1f9t:A, 1f9u:A, 1f9v:A, 3kar:A
24 4etp:A 379 22 0.1071 0.0317 0.5455 7.2 1f9t:A, 1f9u:A, 1f9v:A, 3kar:A
25 3r4a:B 30 20 0.1250 0.4667 0.7000 0.087 3r4a:C, 3r4h:B, 3r4h:C
26 3r4a:B 30 22 0.1161 0.4333 0.5909 0.63 3r4a:C, 3r4h:B, 3r4h:C
27 7q1s:E 30 20 0.1250 0.4667 0.7000 0.40 7q1s:M, 7q1s:A
28 7q1s:E 30 28 0.1250 0.4667 0.5000 5.4 7q1s:M, 7q1s:A
29 4h8g:F 30 19 0.1250 0.4667 0.7368 0.60 4h8g:H
30 6er9:A 531 65 0.1696 0.0358 0.2923 0.77 6er9:B, 6era:A, 6era:B, 3gwd:A, 3gwf:A, 4rg3:A, 4rg4:A, 3ucl:A
31 5dtb:A 263 45 0.1518 0.0646 0.3778 1.1 5dtb:B, 5ehm:A, 5ehm:B, 5ehs:A, 5ehs:B
32 1g6u:A 48 21 0.1071 0.2500 0.5714 2.6 1g6u:B
33 7c39:A 346 63 0.1696 0.0549 0.3016 3.0 7c38:A, 7c38:B, 7c39:B, 7c3c:A, 7c3c:B, 7c3d:A, 7c3d:B
34 7c39:A 346 32 0.1161 0.0376 0.4062 7.4 7c38:A, 7c38:B, 7c39:B, 7c3c:A, 7c3c:B, 7c3d:A, 7c3d:B
35 7q1s:J 30 19 0.1161 0.4333 0.6842 3.3 7q1s:N, 7q1s:F
36 3o9z:A 310 22 0.0804 0.0290 0.4091 5.1 3o9z:B, 3o9z:C, 3o9z:D, 3oa0:A, 3oa0:B, 3oa0:C, 3oa0:D
37 8b45:B 30 20 0.0982 0.3667 0.5500 6.8 8b45:C, 8b45:D
38 3c9f:B 540 27 0.0982 0.0204 0.4074 7.8 3c9f:A
39 4pak:A 304 61 0.1339 0.0493 0.2459 10.0 4p9k:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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