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BioLiP
>protein
SRYFDLQDMENTTGSWDMYGVDEKKRYPDNQAKFFTQATDIISRRESLRALVALSGIAAIVTYGLKAKDADLPITKGPQT
TGENGKGGSV

The query sequence (length=90) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7d0j:H 100 91 1.0000 0.9000 0.9890 1.71e-61 7dz7:H, 7dz8:H, 8h2u:H, 6ijo:H
2 6sl5:H 92 90 0.6000 0.5870 0.6000 5.06e-32
3 6igz:H 88 88 0.5111 0.5227 0.5227 5.18e-23
4 6zzx:H 94 90 0.4778 0.4574 0.4778 9.86e-23 6zzy:H
5 7yca:H 96 86 0.5111 0.4792 0.5349 7.79e-21
6 6yez:H 93 85 0.3667 0.3548 0.3882 4.05e-15 7dkz:H, 5l8r:H, 3lw5:H, 4rku:H, 4y28:H, 6yac:H, 6zoo:H, 6zxs:H
7 4xk8:H 90 90 0.3667 0.3667 0.3667 1.07e-13 4xk8:h
8 7wfd:AH 95 91 0.3889 0.3684 0.3846 1.63e-13 8j6z:H, 8j7a:H, 8j7b:H, 2o01:H, 7wfe:BH, 7wg5:AH, 2wsc:H, 2wse:H, 2wsf:H
9 8htu:H 95 79 0.3333 0.3158 0.3797 8.39e-13 7ksq:H, 7kux:H, 6l35:H, 7xqp:H
10 8wgh:H 90 76 0.3444 0.3444 0.4079 1.67e-10
11 5zji:H 95 45 0.2333 0.2211 0.4667 1.03e-07 8bcv:H, 8bcw:H
12 7oi6:y 331 50 0.2000 0.0544 0.3600 0.30 8pk0:t
13 2c5w:B 385 34 0.1222 0.0286 0.3235 1.5 2c6w:B, 2zc5:B, 2zc5:D, 2zc6:B, 2zc6:D
14 8c6z:A 573 64 0.2333 0.0366 0.3281 3.2 8ovr:A
15 6ldo:A 381 37 0.1444 0.0341 0.3514 5.2 6ldo:B, 6ldo:C, 6ldo:D, 6ldo:E, 6ldo:F, 6le4:A, 6le4:B, 6le4:C, 6le4:D, 6le4:E, 6le4:F
16 6ryr:W 708 20 0.1111 0.0141 0.5000 7.9 2l75:A, 1mm2:A, 6q3m:D, 6ryu:W, 6ryu:V
17 2q0e:A 331 38 0.1444 0.0393 0.3421 8.4 2ikf:A, 5kal:A, 5kal:B, 2nom:A, 2q0c:A, 2q0d:A, 2q0f:A, 2q0f:B, 2q0g:A, 2q0g:B
18 4rkm:B 660 40 0.1222 0.0167 0.2750 9.4 4rkm:A, 4rkm:I, 4rkm:C, 4rkm:D, 4rkm:K, 4rkm:E, 4rkm:F, 4rkm:H, 4rkm:L, 4rkm:J, 4rkm:G, 4rkn:A, 4rkn:C, 4rkn:B, 4rkn:D
19 2v2f:F 366 34 0.1111 0.0273 0.2941 9.9

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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