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BioLiP
>protein
SRSTHNEMEKNRRAHLRLSLEKLKGLVPLGPDSSRHTTLSLLTKAKLHIKKLEDSDRKAVHQIDQLQREQRHLKRQLEK

The query sequence (length=79) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 1nlw:A 79 79 1.0000 1.0000 1.0000 7.63e-51 1nlw:D
2 5eyo:C 88 78 0.3038 0.2727 0.3077 0.015 1an2:A, 5eyo:A, 1hlo:B, 1nkp:B, 1nkp:E, 1nlw:B, 1nlw:E
3 1hlo:A 80 70 0.2785 0.2750 0.3143 0.038
4 1an4:A 65 61 0.2532 0.3077 0.3279 0.046 1an4:B
5 7xi4:A 283 74 0.2785 0.0777 0.2973 0.053 8g4a:A, 8g4a:B, 5nj8:B, 5sy7:A, 5v0l:A, 7xhv:A, 4zph:A, 4zpk:A
6 8ia3:E 111 84 0.2658 0.1892 0.2500 0.13 8ia3:A, 8ia3:B, 8ia3:F
7 4zpr:A 235 62 0.2405 0.0809 0.3065 0.33
8 8ow1:B 116 59 0.1899 0.1293 0.2542 0.43 8ovw:A, 8ovw:B, 8ow0:A, 8ow0:B, 8ow1:A, 7ssa:L, 7ssa:K
9 8osl:N 290 58 0.2152 0.0586 0.2931 2.2 4h10:A, 8osk:N, 8osl:P
10 6vlo:A 319 25 0.1519 0.0376 0.4800 3.8 6vlo:B, 6vlo:C, 6vlo:D
11 4etz:B 289 41 0.2278 0.0623 0.4390 4.4 4dmz:A, 4dmz:B, 4dn0:A, 4etz:A, 4eu0:A, 4euv:A
12 5nj8:D 134 53 0.2025 0.1194 0.3019 5.7
13 7xi3:A 287 53 0.2025 0.0557 0.3019 7.7
14 6fvt:K 394 33 0.1772 0.0355 0.4242 7.8 6ef0:K, 6ef1:K, 6ef2:K, 6ef3:K, 6fvu:K, 6fvv:K, 6fvw:K, 6fvx:K, 6fvy:K, 5mp9:K, 5mpa:K, 5mpb:K, 5mpc:K, 7qo4:K, 7qo5:K, 7qo6:K
15 8ptk:C 375 60 0.2278 0.0480 0.3000 8.7 5adx:F, 5afu:F, 5afu:A, 5afu:B, 5afu:C, 5afu:D, 5afu:E, 5afu:G, 5afu:I, 6f1t:F, 6f1t:A, 6f1t:B, 6f1t:C, 6f1t:D, 6f1t:E, 6f1t:G, 6f1t:I, 6f1u:F, 6f1u:B, 6f1u:D, 6f38:F, 6f38:A, 6f38:B, 6f38:C, 6f38:D, 6f38:E, 6f38:G, 6f38:I, 6f3a:F, 6f3a:A, 6f3a:B, 6f3a:C, 6f3a:D, 6f3a:E, 6f3a:G, 6f3a:I, 5nw4:T, 8ptk:A, 8ptk:B, 8ptk:D, 8ptk:E, 8ptk:F, 8ptk:G, 8ptk:I, 7z8f:A, 7z8f:B, 7z8f:C, 7z8f:D, 7z8f:E, 7z8f:F, 7z8f:G, 7z8f:I, 7z8i:A, 7z8i:B, 7z8i:C, 7z8i:D, 7z8i:E, 7z8m:I, 7z8m:G, 6znl:A, 6znl:B, 6znl:C, 6znl:D, 6znl:E, 6znl:F, 6znl:G, 6znl:I, 6znm:G, 6znm:I, 6znn:G, 6znn:I, 6zno:G, 6zno:I, 6zo4:G, 6zo4:I
16 1am9:C 82 57 0.2278 0.2195 0.3158 9.2 1am9:D, 1am9:A, 1am9:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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