Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
SRSTHNEMEKNRRAHLRLSLEKLKGLVPLGPDSSRHTTLSLLTKAKLHIKKLEDSDRKAVHQIDQLQREQRHLKRQL

The query sequence (length=77) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 1nlw:A 79 77 1.0000 0.9747 1.0000 1.52e-49 1nlw:D
2 5eyo:C 88 78 0.3117 0.2727 0.3077 0.014 1an2:A, 5eyo:A, 1hlo:B, 1nkp:B, 1nkp:E, 1nlw:B, 1nlw:E
3 1hlo:A 80 70 0.2857 0.2750 0.3143 0.036
4 1an4:A 65 61 0.2597 0.3077 0.3279 0.041 1an4:B
5 7xi4:A 283 74 0.2857 0.0777 0.2973 0.046 8g4a:A, 8g4a:B, 5nj8:B, 5sy7:A, 5v0l:A, 7xhv:A, 4zph:A, 4zpk:A
6 4zpr:A 235 62 0.2468 0.0809 0.3065 0.28
7 8ow1:B 116 61 0.1948 0.1293 0.2459 0.43 8ovw:A, 8ovw:B, 8ow0:A, 8ow0:B, 8ow1:A, 7ssa:L, 7ssa:K
8 8ia3:E 111 60 0.2078 0.1441 0.2667 0.61 8ia3:A, 8ia3:B, 8ia3:F
9 4etz:B 289 41 0.2338 0.0623 0.4390 0.93 4dmz:A, 4dmz:B, 4dn0:A, 4etz:A, 4eu0:A, 4euv:A
10 8osl:N 290 58 0.2208 0.0586 0.2931 1.9 4h10:A, 8osk:N, 8osl:P
11 6vlo:A 319 25 0.1558 0.0376 0.4800 3.6 6vlo:B, 6vlo:C, 6vlo:D
12 5nj8:D 134 53 0.2078 0.1194 0.3019 4.7
13 7xi3:A 287 53 0.2078 0.0557 0.3019 6.6
14 6fvt:K 394 31 0.1818 0.0355 0.4516 7.1 6ef0:K, 6ef1:K, 6ef2:K, 6ef3:K, 6fvu:K, 6fvv:K, 6fvw:K, 6fvx:K, 6fvy:K, 5mp9:K, 5mpa:K, 5mpb:K, 5mpc:K, 7qo4:K, 7qo5:K, 7qo6:K
15 8ptk:C 375 60 0.2338 0.0480 0.3000 7.9 5adx:F, 5afu:F, 5afu:A, 5afu:B, 5afu:C, 5afu:D, 5afu:E, 5afu:G, 5afu:I, 6f1t:F, 6f1t:A, 6f1t:B, 6f1t:C, 6f1t:D, 6f1t:E, 6f1t:G, 6f1t:I, 6f1u:F, 6f1u:B, 6f1u:D, 6f38:F, 6f38:A, 6f38:B, 6f38:C, 6f38:D, 6f38:E, 6f38:G, 6f38:I, 6f3a:F, 6f3a:A, 6f3a:B, 6f3a:C, 6f3a:D, 6f3a:E, 6f3a:G, 6f3a:I, 5nw4:T, 8ptk:A, 8ptk:B, 8ptk:D, 8ptk:E, 8ptk:F, 8ptk:G, 8ptk:I, 7z8f:A, 7z8f:B, 7z8f:C, 7z8f:D, 7z8f:E, 7z8f:F, 7z8f:G, 7z8f:I, 7z8i:A, 7z8i:B, 7z8i:C, 7z8i:D, 7z8i:E, 7z8m:I, 7z8m:G, 6znl:A, 6znl:B, 6znl:C, 6znl:D, 6znl:E, 6znl:F, 6znl:G, 6znl:I, 6znm:G, 6znm:I, 6znn:G, 6znn:I, 6zno:G, 6zno:I, 6zo4:G, 6zo4:I
16 1am9:C 82 57 0.2338 0.2195 0.3158 8.6 1am9:D, 1am9:A, 1am9:B

[Back]
Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218