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BioLiP
>protein
SRRSASHPTYSEMIAAAIRAEKSRGGSSRQSIQKYIKSHYKVGHNADLQIKLSIRRLLAAGVLKQTKGVGASGSFRLAKS
DKAK

The query sequence (length=84) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 8xjv:Aq 190 84 1.0000 0.4421 1.0000 1.27e-56 4qlc:U, 5wcu:U, 5wcu:V, 8xjv:Ah, 8xjv:Ai, 8xjv:Aj, 8xjv:Ak, 8xjv:Al, 8xjv:Am, 8xjv:An, 8xjv:Ao, 8xjv:Ap, 8xjv:Ar, 8xjv:As, 7xvm:U, 7xvm:V
2 6lab:V 109 84 0.7857 0.6055 0.7857 1.28e-43 8aag:Z, 7cow:S, 7cow:T, 7dbp:K, 7k5x:U, 6la2:S, 6la2:T, 6la8:S, 6la9:S, 6la9:T, 6lab:U, 5nl0:Z, 8tb9:A, 7xvl:o, 7xx6:o, 7xx6:p
3 7c0j:B 62 71 0.5595 0.7581 0.6620 1.26e-20 7c0j:A
4 7xx5:U 78 79 0.4048 0.4359 0.4304 2.86e-11 8h0v:u, 8h0w:u, 8h1t:K, 7k5y:U, 7pet:u, 7pet:s, 7peu:u, 7pex:u, 7pez:s, 7pf0:u, 7pf0:U, 7pf2:U, 7pf3:s, 7pf5:u, 7pf6:U, 7pfa:U, 7pfa:u, 7pfc:U, 7pfd:U, 7pfe:u, 7pft:U, 7pft:u, 7pft:S, 7pfu:U, 7pfu:S, 7pfv:U, 7pfw:u, 7pfx:S, 8vg2:U
5 7xx7:U 213 69 0.2976 0.1174 0.3623 2.75e-04 7k60:U, 7k63:U, 6l9z:S, 8yti:U
6 7kbf:K 78 81 0.2976 0.3205 0.3086 0.005
7 6c25:A 394 25 0.1190 0.0254 0.4000 0.76
8 6bci:A 292 37 0.1429 0.0411 0.3243 2.1 6bce:A, 6bcf:D, 6bcf:A, 6bcf:G, 6bcf:J, 6bcg:D, 6bcg:A, 6bcg:G, 6bcg:J, 6bch:A, 6bch:D, 6bch:H, 6bch:L, 6bcn:A, 6bcn:C, 6bcn:G, 6bcn:J, 6bct:A, 3r7p:A
9 8fcj:I 494 36 0.1548 0.0263 0.3611 2.5 8fcj:K, 8fcu:I, 8fcu:J, 8fcu:K, 8fcu:L, 8fd3:I, 8ff4:I, 8ff4:J, 8ff4:K, 8ff4:L, 8ff5:I, 8ff5:J, 8ff5:K, 8ff5:L
10 6edw:C 724 43 0.1310 0.0152 0.2558 6.4 6ee1:A, 6ee1:C
11 6rxu:UT 2033 55 0.2381 0.0098 0.3636 6.5 6rxv:UT, 6rxx:UT, 6rxz:UT
12 6edz:C 723 43 0.1310 0.0152 0.2558 6.8
13 6edw:B 746 43 0.1310 0.0147 0.2558 6.8 6edw:A, 6edw:D, 6edz:A, 6edz:B, 6edz:D, 6ee1:B, 6ee1:D
14 2e1d:A 321 37 0.1310 0.0343 0.2973 8.7 2e1d:B
15 7e5a:B 471 34 0.1310 0.0234 0.3235 9.2 7e5a:A
16 5b6e:A 319 55 0.2024 0.0533 0.3091 9.3 5b6d:A, 5b6d:B, 5b6e:B, 5jp9:A, 5jp9:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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