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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
SRRNAWGNLSYADLITKAIESSAEKRLTLSQIYEWMVKSVPYFKDKGDSNSSAGWKNSIRHNLSLHSKFIRVQNEGTGKS
SWWMLNP

The query sequence (length=87) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 3co6:C 91 87 1.0000 0.9560 1.0000 1.86e-60 3co7:C, 3co7:F, 3coa:C, 3coa:F, 5dui:A, 5dui:B, 6lbi:C, 6lbi:D, 6lbi:G, 6lbi:H, 6lbi:K, 6lbi:L, 4lg0:A
2 3l2c:A 85 85 0.8391 0.8588 0.8588 8.35e-52
3 2uzk:A 97 81 0.8276 0.7423 0.8889 1.53e-51 2uzk:C
4 7vov:A 93 80 0.4483 0.4194 0.4875 2.04e-20 7vou:C, 7vov:B
5 7cby:C 100 81 0.4368 0.3800 0.4691 2.63e-20
6 3g73:B 95 78 0.4253 0.3895 0.4744 1.29e-18 7fj2:A, 7fj2:B, 7fj2:E, 7fj2:F, 3g73:A
7 8bzm:E 95 81 0.4253 0.3895 0.4568 2.16e-18 8bzm:I, 8bzm:A, 8bzm:J
8 6ako:C 97 80 0.3793 0.3402 0.4125 7.72e-18 6akp:C, 6lbm:C, 6o3t:A, 6o3t:B
9 2c6y:A 98 80 0.4138 0.3673 0.4500 1.98e-17 2c6y:B
10 2a07:J 83 66 0.3448 0.3614 0.4545 4.38e-17 2a07:K, 2a07:F, 2a07:G, 2a07:H, 2a07:I, 2as5:F, 2as5:G
11 2hdc:A 97 80 0.4023 0.3608 0.4375 1.43e-16
12 6ncm:A 91 78 0.3908 0.3736 0.4359 1.93e-16 6nce:A, 6ncm:B
13 8vfy:O 102 80 0.3793 0.3235 0.4125 5.56e-16 8vfz:O, 8vfz:P, 8vg1:O, 8vg2:O, 7vox:A, 7vox:C, 7vox:H, 7vox:B, 1vtn:C
14 6el8:A 89 78 0.4023 0.3933 0.4487 1.13e-15 6el8:D
15 7yze:A 87 80 0.3793 0.3793 0.4125 1.19e-15 5x07:F, 5x07:C, 5x07:L, 5x07:I, 7yzf:C
16 7tdw:A 90 67 0.3563 0.3444 0.4627 2.14e-15 8sro:A, 8sro:C, 8sro:D, 8sro:B, 8srp:J, 8srp:G, 8srp:E, 8srp:D, 8srp:B, 8srp:A, 8srp:F, 8srp:C, 7tdx:A
17 3qrf:G 82 67 0.3563 0.3780 0.4627 2.82e-15 3qrf:F, 3qrf:H, 3qrf:I, 4wk8:F, 4wk8:G
18 7yza:A 122 79 0.3218 0.2295 0.3544 1.42e-10 7yz7:A, 7yzc:A, 7yzd:A
19 7yzg:A 121 80 0.3448 0.2479 0.3750 7.04e-09
20 7yzb:A 125 80 0.2759 0.1920 0.3000 7.01e-08
21 2c2w:A 291 55 0.2069 0.0619 0.3273 0.030 2c2w:B, 2c2w:C, 2c4t:A, 2c4t:B, 2c4t:C, 2c5b:A, 2c5b:B, 2c5b:C, 2c5h:A, 2c5h:C, 2c5h:B, 2cbx:A, 2cbx:B, 2cbx:C, 4cqj:A, 4cqj:B, 4cqj:C, 5fiu:A, 5fiu:C, 5fiu:B, 1rqp:A, 1rqp:B, 1rqp:C, 1rqr:A, 1rqr:B, 1rqr:C, 2v7t:A, 2v7t:C, 2v7t:B, 2v7u:A, 2v7u:C, 2v7u:B, 2v7v:A, 2v7v:B, 2v7v:C, 2v7w:A, 2v7w:C, 2v7w:B, 2v7x:A, 2v7x:B, 2v7x:C
22 3kdo:C 440 52 0.1724 0.0341 0.2885 0.43 3a12:A, 3a12:B, 3a12:C, 3a12:D, 3a12:E, 3a12:F, 3a12:G, 3a12:H, 3a12:I, 3a12:J, 3a13:A, 3a13:B, 3a13:C, 3a13:D, 3a13:E, 3a13:F, 3a13:G, 3a13:H, 3a13:I, 3a13:J, 3kdn:A, 3kdn:H, 3kdn:B, 3kdn:G, 3kdn:C, 3kdn:F, 3kdn:D, 3kdn:J, 3kdn:E, 3kdn:I, 3kdo:A, 3kdo:H, 3kdo:B, 3kdo:G, 3kdo:F, 3kdo:D, 3kdo:J, 3kdo:E, 3kdo:I, 3wqp:A, 3wqp:B, 3wqp:C, 3wqp:D, 3wqp:E, 3wqp:F, 3wqp:G, 3wqp:H, 3wqp:I, 3wqp:J
23 7ap5:AAA 164 58 0.1954 0.1037 0.2931 0.64 7ap5:CCC, 7ap5:EEE, 7ap5:GGG, 7ap5:III, 7ap5:KKK, 7ap5:MMM, 7ap5:OOO, 5aqd:A, 5aqd:B, 5aqd:C, 5aqd:D, 5aqd:E, 5aqd:F, 5aqd:G, 5aqd:H, 5aqd:I, 5aqd:J, 5aqd:K, 5aqd:L, 7f86:A, 7f86:W, 7f86:D, 7f86:B, 7f86:F, 7f86:H, 7f86:J, 7f86:L, 7f86:O, 7f86:Q, 7f86:U, 7f86:Y, 5fvb:A, 5fvb:B, 5fvb:C, 5fvb:D, 5fvb:E, 5fvb:F, 5fvb:G, 5fvb:H, 5fvb:I, 5fvb:J, 5fvb:K, 5fvb:L, 5nb3:A, 5nb3:B, 5nb3:C, 5nb3:D, 5nb3:E, 5nb3:F, 5nb3:G, 5nb3:H, 5nb3:I, 5nb3:J, 5nb3:K, 5nb3:L, 5nb4:A, 5nb4:B, 5nb4:C, 5nb4:D, 5nb4:E, 5nb4:F, 5nb4:G, 5nb4:H, 5nb4:I, 5nb4:J, 5nb4:K, 5nb4:L
24 4cqb:A 402 48 0.1724 0.0373 0.3125 0.94 5akq:A, 5akq:B, 4cqb:B, 4cqc:A, 4cqc:B, 4cqd:A, 4cqd:B, 2qt3:A, 2qt3:B
25 2i9w:A 177 21 0.0805 0.0395 0.3333 2.9
26 5b6i:A 292 62 0.2069 0.0616 0.2903 4.1 5b6i:B, 5lmz:A, 5lmz:B
27 6q9v:B 145 50 0.1839 0.1103 0.3200 5.3 6q9v:A, 6qa0:A, 6qa0:B
28 9eqg:D 353 22 0.0920 0.0227 0.3636 5.6 6d6t:B, 6d6t:D, 6d6u:B, 6d6u:D, 8dd2:D, 8dd2:B, 8dd3:D, 8dd3:B, 6dw0:A, 6dw0:C, 6dw1:C, 6dw1:A, 9eqg:A, 8foi:A, 8foi:C, 8g4n:A, 8g4n:C, 8g4o:C, 8g4x:A, 8g5f:C, 8g5g:A, 8g5h:C, 6hug:A, 6hug:D, 6huj:A, 6huj:D, 6huk:A, 6huk:D, 6huo:A, 6huo:D, 6hup:A, 6hup:D, 6i53:A, 6i53:D, 7pbd:A, 7qne:A, 7qne:D, 8sgo:B, 8sgo:D, 8si9:B, 8si9:D, 8sid:B, 8sid:D, 7t0w:D, 7t0z:D, 7t0z:B, 8vqy:B, 8vqy:D, 8vrn:D, 8vrn:B, 6x3s:D, 6x3s:B, 6x3t:D, 6x3t:B, 6x3u:D, 6x3v:D, 6x3w:D, 6x3w:B, 6x3x:D, 6x3x:B, 6x3z:D, 6x3z:B, 6x40:D, 6x40:B
29 3j8h:A 3660 18 0.0690 0.0016 0.3333 6.7 3j8h:C, 3j8h:E, 3j8h:G
30 8duj:A 3823 18 0.0690 0.0016 0.3333 6.7
31 8duj:D 3865 18 0.0690 0.0016 0.3333 6.7
32 8duj:J 3892 18 0.0690 0.0015 0.3333 6.7
33 7umz:A 3927 18 0.0690 0.0015 0.3333 6.7 6g4s:s, 6g4w:s, 5j4z:G, 5j7y:G, 5j8k:G, 5tzs:Q, 7umz:D, 7umz:B, 7umz:C, 5wyj:UC, 5wyj:AG, 5wyk:AG, 5wyk:UC, 4wz7:A, 6xyw:AP
34 8duj:G 3933 18 0.0690 0.0015 0.3333 6.7
35 8dve:G 3944 18 0.0690 0.0015 0.3333 6.7 8dtb:A, 8dve:D, 8dve:A, 8dve:J
36 7cf9:A 3949 18 0.0690 0.0015 0.3333 6.7 7cf9:C, 7cf9:E, 7cf9:G, 8dtb:G, 8dtb:D, 6m2w:A, 6m2w:D, 6m2w:G, 6m2w:J
37 7k0s:A 4110 18 0.0690 0.0015 0.3333 6.7 7k0s:B, 7k0s:D, 7k0s:C, 7k0t:A, 7k0t:B, 7k0t:D, 7k0t:C
38 7tdg:A 4134 18 0.0690 0.0015 0.3333 6.7 7tdg:C, 7tdg:D, 7tdg:B, 7tdi:B, 7tdi:C, 7tdi:D, 7tdi:A, 7tdj:A, 7tdj:B, 7tdj:C, 7tdj:D, 7tdk:A, 7tdk:B, 7tdk:C, 7tdk:D
39 6foo:A 4168 18 0.0690 0.0014 0.3333 6.7 5dat:m2, 5dc3:m2, 5dgv:m2, 5fci:m2, 5fcj:m2, 6foo:B, 6foo:C, 6foo:D, 5i4l:m2, 5it7:KK, 6j3z:20, 6j3z:21, 5j4z:B, 6j40:20, 6j40:40, 6j40:21, 6j40:41, 8j5k:4, 8j5k:9, 5j7y:B, 5j8k:B, 7lh5:BK, 7lh5:DK, 5luf:B, 5lyb:m2, 5mrc:dd, 5mre:dd, 5mrf:dd, 5obm:m2, 5on6:m2, 5ot7:m, 7pkq:V, 7pkt:Y, 6q95:I, 5tga:m2, 5tzs:Z, 5tzs:m, 4u3m:m2, 4u3n:m2, 4u3u:m2, 4u4n:m2, 4u4o:m2, 4u4q:m2, 4u4r:m2, 4u4u:m2, 4u4y:m2, 4u4z:m2, 4u50:m2, 4u51:m2, 4u52:m2, 4u53:m2, 4u55:m2, 4u56:m2, 4u6f:m2, 4uq8:B, 6uz7:AK, 4v3p:SG, 4v5g:BK, 4v5g:DK, 4v5l:BK, 4v5p:BK, 4v5p:DK, 4v5q:BK, 4v5q:DK, 4v5r:BK, 4v5r:DK, 4v5s:BK, 4v5s:DK, 4v6i:AG, 4v88:DK, 4v8o:BK, 4v8q:AK, 4v8t:K, 4v8y:BK, 4v8z:BK, 4v90:BK, 8w4p:4, 6woo:K, 7y1a:A, 7y5e:A8, 7y5e:AC, 7y7a:AN, 7y7a:AY, 5z3g:d
40 5tb3:B 4196 18 0.0690 0.0014 0.3333 6.7 7aih:UB, 7am2:U5, 7am2:U2, 7ane:UB, 7aoi:UK, 6bbm:W, 6c5l:BJ, 6c5l:DJ, 9f1c:BK, 7f4v:aJ, 7f4v:bJ, 7f4v:cJ, 6fg3:A, 6fg3:B, 6fg3:C, 6fg3:D, 1fka:Q, 1fka:T, 5gan:x, 6h8k:Y, 6h8k:j, 6hiv:AB, 6hix:AB, 5j4z:H, 5j4z:E, 5j4z:F, 5j4z:I, 5j7y:H, 5j7y:E, 5j7y:F, 5j7y:I, 5j8k:H, 5j8k:E, 5j8k:F, 5j8k:I, 6jlu:N, 6jlu:n, 7jmf:B, 7jmf:E, 7jmf:G, 7jmf:I, 7jmg:B, 7jmg:E, 7jmg:I, 7jmg:G, 7jmh:B, 7jmh:E, 7jmh:G, 7jmh:I, 7jmi:B, 7jmi:E, 7jmi:G, 7jmi:I, 7jmj:B, 7jmj:E, 7jmj:G, 7jmj:I, 5jpq:n, 5jpq:C, 7l8w:H, 5lc5:P, 5ldw:P, 5ldx:P, 7lh5:BJ, 7lh5:DJ, 5lj3:x, 5lj5:x, 5luf:E, 5luf:F, 5luf:G, 5luf:I, 5nvs:I, 5nvs:K, 5nvs:J, 5nvs:L, 5nvu:K, 5nvu:M, 5nvu:L, 5nvu:N, 2o01:K, 6o1o:B, 6o1o:C, 6o1o:D, 6o1o:E, 6o1o:I, 6o1o:J, 6o1o:K, 5o31:P, 5ot7:l, 7pkq:D, 7pkt:X, 7pkt:C, 7pub:U7, 7pub:UE, 6pv6:B, 6pv6:E, 6pv6:I, 6pv6:G, 1pyh:C, 1pyh:E, 1pyh:K, 1pyh:S, 1pyh:Y, 6q95:H, 7qwq:s, 5t15:B, 5t15:E, 5t15:I, 5t15:G, 5t9m:B, 5t9m:E, 5t9m:I, 5t9m:G, 5t9n:B, 5t9n:E, 5t9n:I, 5t9n:G, 5t9r:B, 5t9r:E, 5t9r:I, 5t9r:G, 5t9s:B, 5t9s:E, 5t9s:I, 5t9s:G, 5t9v:B, 5t9v:G, 5t9v:I, 5t9v:E, 5ta3:B, 5ta3:G, 5ta3:I, 5ta3:E, 5tal:B, 5tal:G, 5tal:I, 5tal:E, 5tam:B, 5tam:E, 5tam:I, 5tam:G, 5tan:B, 5tan:E, 5tan:I, 5tan:G, 5tap:B, 5tap:E, 5tap:I, 5tap:G, 5taq:B, 5taq:E, 5taq:I, 5taq:G, 5tas:B, 5tas:I, 5tas:E, 5tas:G, 5tat:B, 5tat:I, 5tat:E, 5tat:G, 5tau:B, 5tau:I, 5tau:E, 5tau:G, 5tav:B, 5tav:E, 5tav:I, 5tav:G, 5taw:B, 5taw:G, 5taw:I, 5taw:E, 5tax:B, 5tax:I, 5tax:G, 5tax:E, 5tay:B, 5tay:G, 5tay:I, 5tay:E, 5taz:B, 5taz:I, 5taz:G, 5taz:E, 5tb0:B, 5tb0:G, 5tb0:E, 5tb0:I, 5tb1:B, 5tb1:I, 5tb1:E, 5tb1:G, 5tb2:B, 5tb2:I, 5tb2:E, 5tb2:G, 5tb3:E, 5tb3:I, 5tb3:G, 5tb4:B, 5tb4:E, 5tb4:I, 5tb4:G, 7tdh:A, 7tdh:B, 7tdh:C, 7tdh:D, 8tug:M, 8tvp:M, 8tvq:M, 8tvs:M, 8tye:L, 5tzs:y, 5tzs:n, 5tzs:o, 4uq8:E, 4uq8:F, 4uq8:G, 4uq8:I, 4v3p:SW, 4v3p:LL, 4v5e:BJ, 4v5e:DJ, 4v5f:BJ, 4v5f:BL, 4v5f:Bl, 4v5f:DJ, 4v5f:DL, 4v5f:Dl, 4v5g:BJ, 4v5g:DJ, 4v5j:BJ, 4v5j:DJ, 4v5k:BJ, 4v5k:DJ, 4v5l:BJ, 4v5p:BJ, 4v5p:DJ, 4v5q:BJ, 4v5q:DJ, 4v5r:BJ, 4v5r:DJ, 4v5s:BJ, 4v5s:DJ, 4v6i:AW, 4v6i:Ab, 4v6i:BL, 4v7r:Ab, 4v7r:Ac, 4v7r:Ad, 4v7r:Ah, 4v7r:Bh, 4v7r:Cb, 4v7r:Cc, 4v7r:Cd, 4v7r:Ch, 4v7r:Dh, 4v8n:BJ, 4v8n:DJ, 4v8o:BJ, 4v8q:AJ, 4v8u:BJ, 4v8u:DJ, 4v8x:BJ, 4v8x:DJ, 4v90:BJ, 4v9h:BJ, 4v9h:BL, 4v9i:BJ, 4v9i:DJ, 4v9j:BJ, 4v9j:DJ, 4v9k:BJ, 4v9k:DJ, 4v9l:BJ, 4v9l:DJ, 4v9m:BJ, 4v9m:DJ, 7vd5:5, 6w1s:G, 4w29:BJ, 4w29:DJ, 8wb4:g, 8wb4:G, 5wlc:SX, 6wmt:K, 4wt8:CJ, 4wt8:DJ, 5wyj:AA, 5wyj:UA, 5wyj:UB, 5wyk:AA, 5wyk:UA, 5wyk:UB, 4wz7:Z, 4wz7:AN, 8xkl:G, 6xyw:BI, 6xyw:BJ, 6xyw:BK, 7y3f:K, 6z1p:AD, 6z1p:BC, 5zep:0, 6zm5:v
41 6wot:A 4197 18 0.0690 0.0014 0.3333 6.7 6wot:B, 6wot:C, 6wot:D
42 7t65:A 4252 18 0.0690 0.0014 0.3333 6.7 7t64:A, 7t64:B, 7t64:C, 7t64:D, 7t65:B, 7t65:C, 7t65:D
43 7m6a:A 4306 18 0.0690 0.0014 0.3333 6.7 7m6a:G, 7m6a:B, 7m6a:I, 7m6l:A, 7m6l:G, 7m6l:B, 7m6l:I
44 8vk4:D 4379 18 0.0690 0.0014 0.3333 6.7 8vjj:A, 8vjj:D, 8vjj:B, 8vjj:C, 8vjk:A, 8vjk:B, 8vjk:C, 8vjk:D, 8vk3:A, 8vk3:D, 8vk3:B, 8vk3:C, 8vk4:A, 8vk4:B, 8vk4:C
45 5gky:A 3660 18 0.0690 0.0016 0.3333 6.9 5gky:C, 5gky:E, 5gky:G, 5gkz:A, 5gkz:C, 5gkz:E, 5gkz:G, 5gl0:A, 5gl0:C, 5gl0:E, 5gl0:G, 5gl1:A, 5gl1:C, 5gl1:E, 5gl1:G
46 7tzc:A 4404 18 0.0690 0.0014 0.3333 6.9 3rqr:A, 8sen:A, 8sen:B, 8sen:C, 8sen:D, 8seo:A, 8seo:B, 8seo:C, 8seo:D, 8sep:A, 8sep:B, 8sep:C, 8sep:D, 8seq:A, 8seq:B, 8seq:C, 8seq:D, 8ser:A, 8ser:B, 8ser:C, 8ser:D, 8ses:A, 8ses:B, 8ses:C, 8ses:D, 8set:A, 8set:B, 8set:C, 8set:D, 7tzc:B, 7tzc:G, 7tzc:I

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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