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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
SRQEIRLGLPSKGRMSSDTLDLLKDCQLSVKQVNPRQYVAQIPQISNLEVWFQRPKDIVRKLLSGDLDLGIVGLDVLTEF
GQGNEDLIVVHEALEYGDCRLSIAIPQYGIFENVNSLEELAKMPQWTEDKPLRVATGFTYLGPKFMKDNGIKHVAFSTAD
GALEAAPAMGIADAILDLVSSGTTLKENNLKEIEGGTVLESQAALVASRRSMIGRKGVLETTHEMLERLEAHLRAMGQFT
VVANMRGSSAEEVAERVLSQPSLAGLQGPTVSPVFCKRDGKVSADYYAIVICVPKKALYKSIQQLRAIGGSGVLVSPLTY
IFDEETPRWRQLLSKLGL

The query sequence (length=338) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6czm:E 342 337 0.9970 0.9854 1.0000 0.0 6czm:A, 6czm:C, 6czm:D
2 6czm:F 315 335 0.9320 1.0000 0.9403 0.0 6czm:B
3 2vd3:A 289 323 0.3077 0.3599 0.3220 5.36e-33 2vd3:B
4 4yb6:A 296 322 0.2722 0.3108 0.2857 1.86e-28 5ub9:A, 5ub9:B, 5ubg:A, 5ubg:B, 5ubh:A, 5ubh:B, 5ubi:A, 5ubi:B, 4yb5:A, 4yb5:E, 4yb5:B, 4yb5:C, 4yb5:F, 4yb5:D, 4yb6:E, 4yb6:B, 4yb6:C, 4yb6:F, 4yb6:D, 4yb7:B, 4yb7:C, 4yb7:D, 4yb7:E, 4yb7:I, 4yb7:K, 4yb7:A, 4yb7:F, 4yb7:G, 4yb7:H, 4yb7:J, 4yb7:L
5 7dah:C 288 330 0.2811 0.3299 0.2879 4.34e-25 7dah:F
6 1h3d:A 288 327 0.2456 0.2882 0.2538 4.98e-24 1q1k:A
7 5lht:A 284 317 0.2515 0.2993 0.2681 1.57e-19 5lhu:A, 1nh8:A, 5u99:A
8 1z7n:F 205 186 0.1538 0.2537 0.2796 1.05e-11 1z7m:G, 1z7m:E, 1z7m:H, 1z7n:E, 1z7n:G, 1z7n:H
9 6fca:A 209 191 0.1568 0.2536 0.2775 5.53e-09 6fct:A, 6fcw:A, 6fcy:A, 6fd9:A, 6ftt:E, 6ftt:H, 6ftt:G, 6ftt:F, 6fu2:C, 6fu2:D, 6fu7:C, 6fu7:D, 6fua:C, 6fua:D, 6r02:E, 6r02:F, 6r02:G, 6r02:H, 7z6r:C, 7z6r:D, 7z8u:A
10 1usy:G 203 227 0.1627 0.2709 0.2423 7.21e-08 1usy:F, 1usy:E, 1usy:H
11 7pub:Fi 469 97 0.0799 0.0576 0.2784 0.23
12 7pua:Fi 475 98 0.0740 0.0526 0.2551 0.90
13 7x11:A 564 115 0.0917 0.0550 0.2696 2.8 7x11:B, 7x11:C, 7x11:D, 7x12:A, 7x12:B, 7x12:C, 7x12:D
14 3nie:A 369 89 0.0592 0.0542 0.2247 3.6 3nie:B
15 7edd:A 1394 68 0.0503 0.0122 0.2500 3.7 5xyr:A
16 5xxz:B 1310 68 0.0503 0.0130 0.2500 3.7
17 5xya:A 1358 68 0.0503 0.0125 0.2500 3.8 5xxz:A
18 3j9w:AO 88 21 0.0296 0.1136 0.4762 4.4 8buu:o, 8cdu:O, 8cdv:O, 8cec:O, 8ced:O, 8cee:O, 6ha1:o, 6ha8:o, 6htq:o, 5njt:O, 7o5b:O, 8qcq:o, 7qgu:t, 7qh4:s, 8qpp:O, 7qv1:o, 7qv2:o, 7qv3:o, 8r55:O
19 7xi4:A 283 86 0.0680 0.0813 0.2674 5.3 8g4a:A, 8g4a:B, 5nj8:B, 5sy7:A, 5v0l:A, 7xhv:A, 4zph:A, 4zpk:A
20 6vjb:A 1346 50 0.0414 0.0104 0.2800 5.6
21 4zsi:A 166 84 0.0769 0.1566 0.3095 6.1 4zsi:B, 4zsk:A, 4zsk:B
22 1slm:A 226 137 0.0858 0.1283 0.2117 8.7 1b3d:A, 1b3d:B, 1b8y:A, 1biw:A, 1biw:B, 1bm6:A, 1bqo:A, 1bqo:B, 1c3i:A, 1c3i:B, 1c8t:A, 1c8t:B, 1caq:A, 1ciz:A, 1cqr:A, 1cqr:B, 2d1o:A, 2d1o:B, 1d5j:A, 1d5j:B, 1d7x:A, 1d7x:B, 1d8f:A, 1d8f:B, 1d8m:A, 1d8m:B, 4dpe:A, 4dpe:B, 1g05:A, 1g05:B, 1g49:A, 1g49:B, 1g4k:A, 1g4k:B, 1g4k:C, 4g9l:A, 4g9l:B, 1hfs:A, 1hy7:A, 1hy7:B, 4ja1:A, 4ja1:B, 2jnp:A, 2jt5:A, 2jt6:A, 6mav:A, 6n9d:A, 3ohl:A, 3oho:A, 1qia:A, 1qia:B, 1qia:C, 1qia:D, 1qic:A, 1qic:B, 1qic:C, 1qic:D, 7s7l:A, 7s7m:A, 1sln:A, 2srt:A, 1uea:A, 1uea:C, 1ums:A, 1umt:A, 1usn:A, 2usn:A, 3usn:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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