Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
SRIVVHTQTLFDIVNDGYRWRKYGQKSVKGSPYPRSYYRCSSPGCPVKKHVERSSHDTKLLITTYEGKHDHDMPPG

The query sequence (length=76) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 2ayd:A 76 76 1.0000 1.0000 1.0000 3.61e-53
2 8k31:B 79 73 0.6579 0.6329 0.6849 1.83e-35
3 1wj2:A 71 70 0.6053 0.6479 0.6571 1.64e-33 2lex:A
4 8iex:A 88 72 0.5132 0.4432 0.5417 1.33e-23
5 7z0r:A 81 62 0.4737 0.4444 0.5806 7.51e-23 7z0r:B, 7z0u:A
6 6j4f:B 63 63 0.4868 0.5873 0.5873 2.42e-19 6j4f:F
7 7d11:A 79 62 0.4342 0.4177 0.5323 9.57e-19 6j4e:B
8 6j4g:B 58 59 0.4474 0.5862 0.5763 1.74e-18
9 5w3x:D 73 62 0.3816 0.3973 0.4677 5.14e-15 7p8k:B, 5w3x:B
10 6ir8:A 69 59 0.2895 0.3188 0.3729 7.00e-10
11 2ysm:A 111 47 0.1842 0.1261 0.2979 1.3
12 6w1h:A 450 32 0.1447 0.0244 0.3438 1.9
13 6nwz:A 665 21 0.1053 0.0120 0.3810 2.8
14 8j62:C 127 37 0.1711 0.1024 0.3514 4.7 8e40:B, 8j62:G
15 3jcu:E 79 45 0.1842 0.1772 0.3111 4.9 8c29:E, 8c29:e, 3jcu:e, 5mdx:e, 5mdx:E, 7oui:E, 7oui:e, 5xnl:E, 5xnl:e, 5xnm:E, 5xnm:e, 6yp7:e, 6yp7:E
16 2rjb:A 418 28 0.1579 0.0287 0.4286 5.8 2rjb:B, 2rjb:C
17 1br2:A 673 15 0.1053 0.0119 0.5333 6.9 1br2:B, 1br2:C, 1br2:D, 1br2:E, 1br2:F
18 5t45:A 708 15 0.1053 0.0113 0.5333 6.9 5m05:A
19 7mf3:B 896 15 0.1053 0.0089 0.5333 7.0 1br1:A, 1br1:C, 1br1:E, 1br1:G, 1br4:A, 1br4:C, 1br4:E, 1br4:G, 7mf3:A, 6z47:A, 6z47:B
20 4n9f:b 172 37 0.1711 0.0756 0.3514 7.3 8fvi:1, 8fvj:1, 8fvj:6, 8h0i:C, 8h0i:E, 8h0i:G, 8h0i:I, 8j62:E, 8j62:I, 4n9f:G, 4n9f:M, 4n9f:S, 4n9f:d, 4n9f:j, 4n9f:p, 4n9f:v, 4n9f:1, 4n9f:7, 4n9f:q, 4n9f:2
21 7vru:B 494 37 0.1447 0.0223 0.2973 9.8 7vs4:B
22 5ci8:A 117 42 0.1711 0.1111 0.3095 10.0 5ci9:A

[Back]

Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218