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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
SRHSEKIAIRDFQVGDLVLIILDERHDNYVLFTVSPTLYFLHSESLPALDLKPGSRRPWVLGKVMEKEYCQAKKAQNRFK
VPLGTKFYRVKAVSWN

The query sequence (length=96) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8yfk:G 99 99 0.9688 0.9394 0.9394 3.66e-64 7czm:A, 7d0e:A, 8yfk:A, 8yfk:C, 8yfk:E, 8yfl:A, 8yfl:C, 8yfm:A, 8yfm:D, 8yfn:A, 8yfn:C
2 7czm:B 94 96 0.9479 0.9681 0.9479 1.46e-62
3 4d9u:A 307 32 0.1354 0.0423 0.4062 0.074 4d9t:A, 4jg6:A, 4jg7:A, 4jg8:A, 4m8t:A, 4mao:A, 5o1s:A
4 1tzs:A 322 56 0.1979 0.0590 0.3393 0.24
5 1t8t:B 271 59 0.1771 0.0627 0.2881 0.46 1t8t:A, 1t8u:B, 1t8u:A, 6xkg:A, 6xkg:B, 6xl8:A, 6xl8:B
6 4o2z:A 363 35 0.1250 0.0331 0.3429 1.3
7 1smr:A 331 59 0.1875 0.0544 0.3051 1.3 1smr:C, 1smr:E, 1smr:G
8 3ml1:B 109 27 0.1354 0.1193 0.4815 2.6 3o5a:B
9 7m0r:E 458 17 0.1042 0.0218 0.5882 3.0 7m0r:F
10 2ewa:A 330 76 0.1875 0.0545 0.2368 3.5 4e8a:A, 4eh5:A, 1kv2:A, 5ml5:A, 5n63:A, 5omh:A, 2yis:A, 2yiw:A, 3zsi:A, 6zwp:A
11 4gz9:A 562 17 0.1042 0.0178 0.5882 3.6 9eou:A, 4gza:H, 2orz:A, 2qqm:A
12 5wvd:A 241 32 0.1250 0.0498 0.3750 4.0
13 5vdk:A 260 38 0.1354 0.0500 0.3421 5.5
14 3pep:A 326 45 0.1250 0.0368 0.2667 6.5 1psa:A, 1psa:B, 6xct:A, 6xcy:A, 6xcz:A, 6xd2:A
15 3gc8:A 347 75 0.1562 0.0432 0.2000 7.1 3gc8:B, 3gc9:A, 3gc9:B, 3gp0:A, 8ygw:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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