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BioLiP
>protein
SRHCVFCENNNEPEAVINSHSVRDNFNRVLCPKLRTYVCPICGASGDSAHTIKYCPKKPIITMEDAIKAE

The query sequence (length=70) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 5kl1:B 70 70 1.0000 1.0000 1.0000 2.75e-48 5kl8:B
2 3alr:C 67 55 0.3857 0.4030 0.4909 2.68e-16 3alr:A, 3alr:B, 3alr:D
3 2aus:D 53 44 0.2000 0.2642 0.3182 0.46 2aus:B, 2ey4:E, 2ey4:F, 3hax:C, 3hay:C, 3hjw:B, 2hvy:C, 3lwo:B, 3lwp:B, 3lwq:B, 3lwr:B, 3lwv:B, 2rfk:B
4 6xzd:BP1 712 25 0.1571 0.0154 0.4400 3.1 6xzp:BP1, 6xzq:B, 6xzr:BP1, 6y0c:B
5 4dw1:A 324 56 0.2143 0.0463 0.2679 3.2 8jv5:A, 8jv5:B, 8jv5:C, 8jv6:A, 8jv6:B, 8jv6:C, 5wzy:A
6 3uj2:A 423 38 0.1714 0.0284 0.3158 5.2 3uj2:B, 3uj2:C, 3uj2:D, 3uj2:E, 3uj2:F, 3uj2:G, 3uj2:H
7 2hr5:A 170 23 0.1571 0.0647 0.4783 9.9 2hr5:B, 3mps:A, 3mps:B, 3mps:D, 3mps:I, 3mps:F, 3mps:K, 3mps:G, 3mps:H, 1nnq:A, 1nnq:B, 3pwf:A, 3pwf:B, 3pza:A, 3pza:B, 3qvd:A, 3qvd:B, 3qvd:C, 3qvd:D, 3qvd:E, 3qvd:F, 3qvd:G, 3qvd:H

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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