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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
SRGRKVYFVGLNEYPFLPLVAGLLRTYAEQDERIAAAYDFQEPVFLVAPVQEMADGIVEPDVLALSCYVWNFRRQMKVAK
LVKERYPNVLVVAGGPHVPDRPGNFFEKHPYVDVLAHGEGEVAFRELLATRLSDHPDYTAVPGVSVRRGTEAVVGPKAKR
LPRLIDTPSPYLLGVMDGAVATCRERGLRFYALWETNRGCPYSCSFCDWGSATMSTLRKFEDERLQDEIEWFARHDVEDL
FICDANFGIMPRDLEIAHALAEARGELGAPRQVRVNFAKNSNDRVFDISKTWHDADLLMGTTLSMQSTDMDVLEAIDRKN
IGLDNYRKLQQRYAAENIHTYTELILGLPMETARSFRDGIGSLLEAGNHEDLRVYELGILPNAPLNTPEKIEQYGLRTVP
KRMYVERTPDDEAETFEMVMETNAMPRDAWVESFSFIQAVQFLHNGCYTRYLSIFLRQEHGIGYTRFYEGLQDYFTGRPD
TVLGALYLRMRSLYHDYIDMPALPLANLVASQPDMAADLAPYGRRRGWTIDNWGWLRIATDFDRFHTELREYLATLGLDP
AGDARLEDVLRFQQDVMLRPDYSPELGKSAEYAHDWPGYFAGGLLRPRRVRVAYGDQSFGANGRYRPVPGDLKAFTMAAI
GTSYPVSRMGHFCHRFESAEVTSL

The query sequence (length=664) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7kdx:B 664 664 1.0000 1.0000 1.0000 0.0 7kdx:A, 7kdy:A, 7kdy:B
2 5ul4:A 729 302 0.1054 0.0960 0.2318 5.18e-06 5ul3:A
3 6fd2:A 454 171 0.0648 0.0947 0.2515 2.96e-05 6fd2:B
4 6wb6:A 653 69 0.0316 0.0322 0.3043 0.12 6wb6:B
5 7sn8:I 634 87 0.0392 0.0410 0.2989 0.19
6 6wte:A 567 64 0.0316 0.0370 0.3281 0.34 6wte:B
7 6wtf:A 542 64 0.0316 0.0387 0.3281 0.38 6wtf:B
8 6uc2:A 453 85 0.0407 0.0596 0.3176 0.46 6i0m:B, 6i0o:A, 6uc2:B, 6uc2:C, 6uc2:D, 6uc2:E, 6uc2:F, 6uc2:G, 6uc2:H
9 1b3o:B 410 86 0.0361 0.0585 0.2791 0.57
10 8fuz:A 390 86 0.0361 0.0615 0.2791 0.60 8foz:A, 8foz:B, 8foz:C, 8foz:D, 8foz:E, 8foz:F, 8foz:G, 8foz:H, 8fuz:B, 8fuz:C, 8fuz:D, 8fuz:E, 8fuz:F, 8fuz:G, 8fuz:H, 1jr1:B, 6u8e:A, 6u8e:B, 6u8e:C, 6u8e:D, 6u8e:E, 6u8e:F, 6u8e:G, 6u8e:H, 6u8s:A, 6u8s:B, 6u8s:C, 6u8s:D, 6u8s:E, 6u8s:F, 6u8s:G, 6u8s:H, 6ua5:A, 6ua5:B, 6ua5:C, 6ua5:D, 6ua5:E, 6ua5:F, 6ua5:G, 6ua5:H, 6udp:A, 6udp:B, 6udp:C, 6udp:D, 6udp:E, 6udp:F, 6udp:G, 6udp:H
11 1nfb:A 396 86 0.0361 0.0606 0.2791 0.62 1nfb:B
12 1nf7:A 454 86 0.0361 0.0529 0.2791 0.65 1jr1:A, 1nf7:B
13 8g8f:A 491 86 0.0361 0.0489 0.2791 0.71 8g8f:B, 8g8f:C, 8g8f:D, 8g8f:E, 8g8f:F, 8g8f:G, 8g8f:H, 8g9b:A, 8g9b:B, 8g9b:C, 8g9b:D, 8g9b:E, 8g9b:F, 8g9b:G, 8g9b:H, 6i0m:A, 6i0o:B, 6u8n:A, 6u8n:B, 6u8n:C, 6u8n:D, 6u8n:E, 6u8n:F, 6u8n:G, 6u8n:H, 6u8r:D, 6u8r:A, 6u8r:B, 6u8r:C, 6u8r:H, 6u8r:E, 6u8r:F, 6u8r:G, 6u9o:A, 6u9o:B, 6u9o:C, 6u9o:D, 6u9o:E, 6u9o:F, 6u9o:G, 6u9o:H, 6ua2:B, 6ua2:A, 6ua2:D, 6ua2:C, 6ua2:F, 6ua2:E, 6ua2:H, 6ua2:G, 6ua4:B, 6ua4:A, 6ua4:D, 6ua4:C, 6ua4:F, 6ua4:E, 6ua4:H, 6ua4:G, 6uaj:A, 6uaj:B, 6uaj:C, 6uaj:D, 6uaj:E, 6uaj:F, 6uaj:G, 6uaj:H, 6udo:A, 6udo:B, 6udo:C, 6udo:D, 6udo:E, 6udo:F, 6udo:G, 6udo:H, 6udq:A, 6udq:B, 6udq:C, 6udq:D, 6udq:E, 6udq:F, 6udq:G, 6udq:H
14 1hlb:A 157 35 0.0211 0.0892 0.4000 1.1
15 7bxt:A 103 45 0.0226 0.1456 0.3333 2.7 7bxt:E, 7by0:A, 7by0:E, 7y7i:A, 7y7i:E
16 2obb:A 121 77 0.0346 0.1901 0.2987 2.7
17 1b3o:A 304 61 0.0271 0.0592 0.2951 3.1
18 4is1:D 54 18 0.0120 0.1481 0.4444 3.5 4f2j:C, 4is1:C, 3uk3:C, 3uk3:D
19 6imm:d 325 83 0.0407 0.0831 0.3253 4.1
20 6dvv:A 435 64 0.0301 0.0460 0.3125 6.1 6dux:A, 6dux:B, 6dvv:B
21 6pt8:A 350 78 0.0286 0.0543 0.2436 6.3 6pt8:B, 6pu6:A, 6pu6:B
22 5agv:B 393 68 0.0346 0.0585 0.3382 7.2 5agu:A, 5agu:B, 5agv:A, 6fvn:A, 6fvn:B, 6fvn:C, 6fvn:D, 6fvo:A, 6fvo:B, 6fvo:C, 6fvo:D
23 2iwi:B 249 100 0.0377 0.1004 0.2500 7.6 2iwi:A, 4x7q:B, 4x7q:A
24 8c51:A 449 62 0.0316 0.0468 0.3387 7.7 8c51:B, 8c53:A, 8c53:B, 8cgy:A, 8cgy:B, 6rfu:A, 6rfu:B
25 7ok5:A 582 35 0.0241 0.0275 0.4571 8.8 7ok5:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218