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BioLiP
>protein
SRAEYVVTKLDDLINWARRSSLWPMTFGLACCAVEMMHMAAPRYDMDRFGVVFRASPRQADVMIVAGTLTNKMAPALRKV
YDQMPEPRYVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQRKIKREQKLKIWYRR

The query sequence (length=156) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 8q0j:B 158 156 0.9551 0.9430 0.9551 3.97e-112 7ak5:B, 7ak6:B, 7b93:B, 8c2s:B, 8ca3:B, 8ca5:B, 7dgq:D, 7dgr:D, 7dgs:D, 7dgz:D, 7dh0:D, 7dkf:D2, 6g2j:B, 6g72:B, 5gpn:a, 5gup:I, 8iao:B, 8iap:B, 8ib4:B, 8ib5:B, 8ib9:B, 8iba:B, 8ibd:B, 8ibe:B, 8ic2:B, 8ic3:B, 5lc5:B, 5ldw:B, 5ldx:B, 5lnk:6, 5o31:B, 8olt:B, 8om1:B, 7psa:B, 8pw5:6, 8pw6:6, 8pw7:6, 8q0a:B, 8q0f:B, 8q0m:B, 8q0o:B, 8q0q:B, 8q1p:B, 8q1u:B, 8q1y:B, 8q25:B, 8q45:B, 8q46:B, 8q47:B, 8q48:B, 8q49:B, 8q4a:B, 6q9d:S7, 6qa9:S7, 6qbx:S7, 6qc2:S7, 6qc3:S7, 6qc4:S7, 6qc5:S7, 6qc6:S7, 6qc7:S7, 6qc8:S7, 6qc9:S7, 6qca:S7, 6qcf:S7, 7qsd:B, 7qsk:B, 7qsl:B, 7qsm:B, 7qsn:B, 7qso:B, 7r41:B, 7r42:B, 7r43:B, 7r44:B, 7r45:B, 7r46:B, 7r47:B, 7r48:B, 7r4c:B, 7r4d:B, 7r4f:B, 7r4g:B, 8rgp:6, 8rgq:6, 8rgr:6, 8rgt:6, 8ud1:1B, 8ueo:1B, 8uep:1B, 8ueq:1B, 8uer:1B, 8ues:1B, 8uet:1B, 8ueu:1B, 8uev:1B, 8uew:1B, 8uex:1B, 8uey:1B, 8uez:1B, 8ugh:1B, 8ugi:1B, 8ugj:1B, 8ugn:1B, 8ugn:5B, 8ugp:1B, 8ugr:1B, 8ugr:5B, 7v2c:C, 7v2d:C, 7v2e:C, 7v2f:C, 7v2h:C, 7v2k:C, 7v2r:C, 7v30:C, 7v31:C, 7v32:C, 7v33:C, 7v3m:C, 7vb7:C, 7vbn:C, 7vbz:C, 7vwj:C, 7vxp:C, 7vxu:C, 7vy8:C, 7vya:C, 7vyf:C, 7vyh:C, 7vyn:C, 7vz1:C, 7vzv:C, 7vzw:C, 7w00:C, 7w0h:C, 7w0r:C, 7w0y:C, 7w1o:C, 7w1p:C, 7w1t:C, 7w1u:C, 7w1v:C, 7w1z:C, 7w20:C, 7w2k:C, 7w2l:C, 7w2r:C, 7w2u:C, 7w2y:C, 7w31:C, 7w32:C, 7w35:C, 7w4c:C, 7w4d:C, 7w4e:C, 7w4f:C, 7w4g:C, 7w4j:C, 7w4k:C, 7w4l:C, 7w4m:C, 7w4n:C, 7w4q:C, 5xtb:C, 5xtd:C, 5xth:C, 5xti:C, 5xti:BC, 7zd6:6, 7zdh:6, 7zdj:6, 7zdm:6, 7zdp:6, 7zeb:6, 6zk9:6, 6zkc:6, 6zkd:6, 6zke:6, 6zkf:6, 6zkg:6, 6zkh:6, 6zki:6, 6zkj:6, 6zkk:6, 6zkl:6, 6zkm:6, 6zkn:6, 6zko:6, 6zkp:6, 6zkq:6, 6zkr:6, 6zks:6, 6zkt:6, 6zku:6, 6zkv:6, 6zr2:B, 6ztq:B
2 8b9z:B 182 156 0.8205 0.7033 0.8205 4.79e-101 8ba0:B, 8esw:S7, 8esz:S7
3 8e73:S7 158 154 0.7949 0.7848 0.8052 5.18e-97 7a23:E, 7a24:E, 7aqr:B, 7ar7:B, 7ar8:B, 7arb:B, 8bee:B, 8bpx:B, 8bq5:B, 8bq6:B, 6x89:S7
4 7zm7:K 182 153 0.7500 0.6429 0.7647 1.50e-93 6h8k:K, 7zmb:K, 7zmg:K
5 7o6y:K 177 156 0.7372 0.6497 0.7372 4.97e-93 6gcs:K, 7o71:K, 6rfq:K, 6rfr:K, 6rfs:K, 4wz7:K, 6y79:K, 6yj4:B
6 8qby:B 148 146 0.7564 0.7973 0.8082 5.76e-88
7 7arc:B 154 154 0.7564 0.7662 0.7662 5.99e-87 7ard:B
8 7tgh:S7 162 146 0.6538 0.6296 0.6986 8.93e-83 8b6f:AT, 8bqs:AT, 8gym:s7, 8gym:S7, 8gzu:s7, 8gzu:S7
9 8iuf:S7 201 142 0.6603 0.5124 0.7254 3.34e-77 8j9h:S7, 8j9i:S7, 8j9j:S7
10 7q5y:F 135 136 0.5577 0.6444 0.6397 2.79e-67 7q5y:L, 7q5y:R, 7q5y:X
11 6i0d:6 166 145 0.5321 0.5000 0.5724 4.70e-61 4hea:6, 4hea:G, 6i0d:G, 6i1p:6, 6i1p:G, 3i9v:6, 3i9v:F, 3ias:6, 3ias:F, 3ias:O, 3ias:X, 3m9s:6, 3m9s:F, 6q8o:6, 6q8o:G, 6q8w:6, 6q8w:G, 6q8x:6, 6q8x:G, 6y11:6, 6y11:G, 6ziy:6, 6zjl:6, 6zjn:6, 6zjy:6
12 6nbq:K 212 144 0.4872 0.3585 0.5278 1.47e-56 6hum:K, 6khi:K, 6khj:K, 6l7o:K, 6l7p:K, 6nbx:K, 6nby:K, 6tjv:K
13 8e9g:B 183 142 0.5000 0.4262 0.5493 1.79e-56 8e9h:B, 8e9i:B
14 7z7s:B 213 146 0.4936 0.3615 0.5274 8.67e-55 7nyr:B, 7nyu:B, 7nyv:B, 7p61:B, 7p62:B, 7p63:B, 7p64:B, 7p7c:B, 7p7j:B, 7p7k:B, 7p7l:B, 7p7m:B, 7z7r:B, 7z7t:B, 7z7v:B, 7z80:B, 7z83:B, 7z84:B
15 2fug:6 144 145 0.4551 0.4931 0.4897 4.80e-50 2fug:F, 2fug:O, 2fug:X, 3iam:6, 3iam:F, 2ybb:6
16 7wfg:K 167 148 0.4423 0.4132 0.4662 7.78e-49 7wg5:K
17 7p69:B 169 148 0.4551 0.4201 0.4797 1.07e-48 7nz1:B, 7p7e:B, 7zc5:B, 7zci:B
18 7awt:B 141 130 0.4487 0.4965 0.5385 3.74e-47
19 6u8y:J 177 155 0.3654 0.3220 0.3677 1.51e-34 6u8y:j
20 6cfw:J 143 118 0.3077 0.3357 0.4068 9.33e-33
21 7z0s:G 250 111 0.3141 0.1960 0.4414 5.87e-29 7z0t:G
22 6qgr:G 253 87 0.1538 0.0949 0.2759 1.07e-04 6qgt:G, 6qii:G
23 4omf:G 231 92 0.1538 0.1039 0.2609 0.001 4ci0:B, 3zfs:B
24 1l1e:A 272 124 0.1987 0.1140 0.2500 0.007 1l1e:B
25 8w7y:A 474 64 0.1218 0.0401 0.2969 0.009
26 5xf9:C 178 89 0.1795 0.1573 0.3146 0.028 5xf9:G, 5xfa:C, 5xfa:G
27 7t2r:E 179 27 0.0897 0.0782 0.5185 0.061 7t2r:J, 7t30:E, 7t30:J
28 1tpy:A 285 123 0.1923 0.1053 0.2439 0.30
29 5jsh:A 283 124 0.1731 0.0954 0.2177 0.59 5jsk:A, 5jsu:A, 5jsy:A, 5jt1:A, 6rtp:A, 6ru9:A, 6ruc:A, 2wpn:A, 6z7r:A, 6z7r:C, 6z8j:A, 6z8j:C, 6z8m:A, 6z8o:A, 6z8o:C, 6z9g:A, 6z9g:C, 6z9g:E, 6z9g:G, 6z9o:A, 6za1:A, 3ze6:A, 3ze7:A, 3ze8:A, 3ze9:A, 3zea:A
30 5sup:B 383 28 0.0705 0.0287 0.3929 0.67 5sup:A, 5sup:C, 5suq:A, 5suq:C
31 6w2j:B 1364 46 0.0833 0.0095 0.2826 2.7
32 4kl8:S 279 110 0.1731 0.0968 0.2455 3.8 1cc1:S, 4kl8:T, 4kn9:S, 4kn9:T, 4ko1:S, 4ko1:T, 4ko2:S, 4ko2:T, 4ko3:S, 4ko3:T, 4ko4:S, 4ko4:T
33 5odc:E 298 26 0.0641 0.0336 0.3846 4.5 5odc:K, 5odh:E, 5odh:K, 5odi:E, 5odi:K, 5odq:E, 5odq:K, 5odr:E, 5odr:K
34 8i90:A 440 95 0.1410 0.0500 0.2316 4.7 8i90:B, 8i94:A, 8i94:B
35 5m5w:B 1183 22 0.0705 0.0093 0.5000 4.9 4c2m:B, 4c2m:Q, 4c3h:B, 4c3i:B, 4c3j:B, 5g5l:B, 6h67:B, 6h68:B, 6hko:B, 6hlq:B, 6hlr:B, 5m3f:B, 5m3m:B, 5m5x:B, 5m5y:B, 5m64:B, 5n5y:B, 5n5z:B, 5n60:B, 5n61:B, 5oa1:B, 6rqh:B, 6rql:B, 6rqt:B, 6rrd:B, 6rui:B, 6ruo:B, 6rwe:B, 6tps:B, 5w5y:B, 5w64:B, 5w65:B, 5w66:B, 4ym7:AB, 4ym7:BB, 4ym7:CB, 4ym7:DB, 4ym7:EB, 4ym7:FB
36 3nzq:A 628 92 0.1667 0.0414 0.2826 5.2 3nzq:B
37 5lmx:B 1115 22 0.0705 0.0099 0.5000 5.3
38 8inh:B 454 60 0.1090 0.0374 0.2833 7.3 8inh:A
39 7vpk:A 1055 75 0.1218 0.0180 0.2533 7.6 8iek:P, 8ies:P, 7m5v:A, 7n70:A, 7n72:A, 7n73:A, 7n74:A, 7n77:A, 7n78:A, 7vpi:A, 7vpj:A, 7vpl:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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