Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
SRAAVDRIIRVDHAGEYGANRIYAGQMAVLGRTSVGPVIQKMWDQEKDHLKKFNELMVTFRVRPTVLMPLWNVLGFALGA
GTALLGKEGAMACTVAVEESIAHHYNNQIRTLMEEDPEKYEELLQLIKKFRDEELEHHDIGLDHDAELAPAYAVLKSIIQ
AGCRVAIYLSERL

The query sequence (length=173) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7sss:F 173 173 1.0000 1.0000 1.0000 5.23e-129 7sss:E, 7sss:H, 7sss:G
2 1ez4:B 318 47 0.0925 0.0503 0.3404 0.23 1ez4:A, 1ez4:C, 1ez4:D
3 5y95:A 80 45 0.0636 0.1375 0.2444 0.54
4 7s8t:J 83 58 0.0925 0.1928 0.2759 0.69 7s8t:A, 7s8t:E, 7s8t:F, 7s8t:H, 7s8t:G, 7s8t:I
5 7x0l:A 409 58 0.1156 0.0489 0.3448 0.91 7x0j:A, 7x0j:B, 7x0k:A, 7x0k:B, 7x0l:B, 7x0m:A, 7x0m:B, 7x0n:A, 7x0n:B
6 7l4a:A 223 50 0.1272 0.0987 0.4400 0.96
7 1t2e:A 317 51 0.1040 0.0568 0.3529 1.3 4b7u:B, 4b7u:C, 4b7u:D, 1cet:A, 1ldg:A, 1u4o:A, 1u4s:A, 1u5a:A, 1u5c:A, 1xiv:A
8 2czy:A 77 42 0.0636 0.1429 0.2619 2.4
9 1llc:A 320 39 0.0694 0.0375 0.3077 2.4 6j9t:B, 6j9t:D, 6j9t:E, 6j9t:C, 6j9t:F, 6j9u:A, 6j9u:C, 6j9u:D
10 8gnn:C 259 33 0.0809 0.0541 0.4242 3.6 6j8y:C
11 8vhu:A 743 40 0.0694 0.0162 0.3000 3.6 5cns:A, 5cns:B, 5cns:C, 5cns:D, 5cnt:A, 5cnt:B, 5cnt:C, 5cnt:D, 5cnu:A, 5cnu:B, 5cnu:C, 5cnu:D, 5cnv:A, 5cnv:B, 5cnv:C, 5cnv:D, 4erm:A, 4erm:B, 4erm:C, 4erm:D, 4erp:A, 4erp:B, 4erp:C, 4erp:D, 1r1r:A, 1r1r:B, 1r1r:C, 2r1r:A, 2r1r:B, 2r1r:C, 3r1r:A, 3r1r:B, 3r1r:C, 4r1r:A, 4r1r:B, 4r1r:C, 5r1r:A, 5r1r:B, 5r1r:C, 6r1r:A, 6r1r:B, 6r1r:C, 7r1r:A, 7r1r:B, 7r1r:C, 3uus:A, 3uus:B, 3uus:C, 3uus:D, 8vhn:A, 8vhn:B, 8vho:A, 8vho:B, 8vhp:A, 8vhp:B, 8vhp:C, 8vhp:D, 8vhp:E, 8vhp:F, 8vhp:G, 8vhp:H, 8vhq:A, 8vhq:B, 8vhq:C, 8vhq:D, 8vhr:A, 8vhr:B, 8vhr:C, 8vhr:D, 8vhu:B, 6w4x:A, 6w4x:B, 2x0x:A, 2x0x:B, 2x0x:C, 2xak:A, 2xak:B, 2xak:C, 2xap:A, 2xap:B, 2xap:C, 2xav:A, 2xav:B, 2xav:C, 2xaw:A, 2xaw:B, 2xaw:C, 2xax:A, 2xax:B, 2xax:C, 2xay:A, 2xay:B, 2xay:C, 2xaz:A, 2xaz:B, 2xaz:C, 2xo4:A, 2xo4:B, 2xo4:C, 2xo5:A, 2xo5:B, 2xo5:C
12 3msd:A 330 58 0.0983 0.0515 0.2931 3.7 3msd:B, 3msg:A, 3msg:B, 3mua:A, 3mua:B, 3mui:A, 3mui:B
13 2a92:C 318 41 0.0867 0.0472 0.3659 6.0 2a92:A, 2a92:B, 2a92:D, 2a94:A, 2aa3:A, 2aa3:B, 2aa3:C, 2aa3:D, 4b7u:A, 5hru:A, 5hru:B, 5hto:A, 5hto:B, 5hto:D, 5hto:E, 1oc4:A, 1oc4:B, 4plz:A, 1t24:A, 1t25:A, 1t26:A, 1t2c:A, 1t2d:A, 6txr:A, 6txr:B, 6txr:C, 6txr:D, 3zh2:A, 3zh2:B, 3zh2:C, 3zh2:D
14 1pic:A 112 79 0.1387 0.2143 0.3038 6.2 5aul:A, 7cio:A, 1h9o:A
15 8a22:AN 420 108 0.1792 0.0738 0.2870 6.6 8a22:AM, 8apn:AN, 8apn:AM, 8apo:AN, 8apo:AM
16 7u0l:A 904 26 0.0694 0.0133 0.4615 7.8
17 3k1u:A 314 65 0.0867 0.0478 0.2308 8.1
18 1e91:A 85 40 0.0751 0.1529 0.3250 9.0 1pd7:A

[Back]

Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218