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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
SQVVRIVGVGRTGIGKLHKSVDELAASALKCALVDANMKQCDLQALIAVPSLASPQFMQAHHIATVAGLFPTKGKFIVRT
VDTGGAGPITALGMAVDLVRTRCAETVAVIAADAVLSMGSGAFAERSNASLRRSGLPEPCIPHGYDRYAQWYMSRYGLKR
EQLAMVPVLMSKMAERHPEAMCQKAYTLDEVLHSRCVAPVTNLLECARRADGAVALIVSGEAHYAEHFGGSKPIIASVAE
ASGPLFPPIVPDIFSCRHAARDAFLSANLNVGDIHFFGLYDCFPICLIQAVEAVGLCPEGKGGEFMETAYNEMLNNGGVL
DPSKFPINTHGGLQCFGAPWEVPAMYNITEAIAQLSEEAGDRQLTPVPKRALVYGNGGIFSASSVAILISDL

The query sequence (length=392) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 5ab6:D 396 396 0.9974 0.9874 0.9874 0.0 5ab6:A, 5ab6:B, 5ab6:C, 5ab6:E, 5ab6:F, 5ab7:A, 5ab7:B, 5ab7:C, 5ab7:D, 5ab7:E, 5ab7:F
2 6hsj:B 390 292 0.2245 0.2256 0.3014 1.27e-21 6hsp:B
3 7pyt:B 392 245 0.1837 0.1837 0.2939 1.57e-20 7pyt:D, 7yxm:B, 7yxm:D
4 6esq:A 392 376 0.2577 0.2577 0.2686 1.91e-17 6esq:B, 6esq:C, 6esq:D
5 4yzo:C 347 372 0.2474 0.2795 0.2608 1.26e-14 4yzo:D
6 5lnq:A 430 196 0.1250 0.1140 0.2500 2.68e-10 5lnq:B, 5lnq:D, 5lot:A, 5lot:B, 5lot:D, 3zbn:A, 3zbn:B, 3zbn:D
7 5mg5:L 396 132 0.1046 0.1035 0.3106 5.36e-05 5mg5:C, 5mg5:O, 5mg5:R
8 5xtc:i 347 32 0.0332 0.0375 0.4062 0.66 5xtd:i, 5xth:i, 5xti:i, 5xti:Bi
9 5lal:B 155 57 0.0383 0.0968 0.2632 1.2 5lal:A
10 7tcn:C 220 51 0.0434 0.0773 0.3333 1.6 7tcn:G, 7tco:C, 7tco:G, 7tco:O
11 1x7p:A 265 167 0.1199 0.1774 0.2814 5.5 1x7p:B
12 3fbu:A 166 24 0.0230 0.0542 0.3750 6.3
13 6rjm:B 456 87 0.0689 0.0592 0.3103 8.4 6rjm:A, 6rjo:A, 6rjo:B, 6rk2:A, 6rk2:B
14 4uy7:A 327 52 0.0434 0.0520 0.3269 9.1 6fnq:A, 6fnq:B, 6fnr:A, 6fnr:B, 6fns:A, 6fns:B, 6fnt:A, 6fnt:B, 4pin:A, 4pin:B, 4pio:A, 4pio:B, 4pip:A, 4pip:B, 4pip:C, 4pip:D, 4uy5:A, 4uy6:A, 4uy7:B
15 7mcs:G 358 42 0.0383 0.0419 0.3571 9.4
16 8glw:A 483 42 0.0383 0.0311 0.3571 9.9 8glu:G, 8glu:F, 8glu:E, 8glw:E, 8glw:F, 8glw:B, 8glw:C, 8glw:D, 8glw:G, 8glx:F, 8glx:B, 8glx:G, 8glx:E, 8glx:C, 8glx:A, 7mbw:A, 7mbw:B, 7mbw:C, 7mbw:D, 7mcs:A, 7mcs:D, 7mcs:B, 7mcs:C, 7mcs:E, 7mcs:F, 8vcj:B, 8vcj:F, 8vcj:C, 8vcj:A, 8vcj:D, 8vcj:E, 8vcj:G, 8vct:C, 8vct:B, 8vct:G, 8vct:E, 8vct:F, 8vct:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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