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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
SQVVRIVGVGRTGIGKLHKSVDELAASALKCALVDANMKQCDLQALIAVPSLASPQFMQAHHIATVAGLFPTKGKFIVRT
VDTGGAGPITALGMAVDLVRTRCAETVAVIAADAVLSMGSGAFAERSNASLRRSGLPEPCIPHGYDRYAQWYMSRYGLKR
EQLAMVPVLMSKMAERHPEAMCQKAYTLDEVLHSRCVAPVTNLLECARRADGAVALIVSGEAHYAEHFAGGSKPIIASVA
EASGPLFPPIVPDIFSCRHAARDAFLSANLNVGDIHFFGLYDCFPICLIQAVEAVGLCPEGKGGEFMETAYNEMLNNGGV
LDPSKFPINTHGGLQCFGAPWEVPAMYNITEAIAQLSEEAGDRQLTPVPKRALVYGNGGIFSASSVAILISDL

The query sequence (length=393) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 5ab6:D 396 396 0.9975 0.9899 0.9899 0.0 5ab6:A, 5ab6:B, 5ab6:C, 5ab6:E, 5ab6:F, 5ab7:A, 5ab7:B, 5ab7:C, 5ab7:D, 5ab7:E, 5ab7:F
2 6hsj:B 390 293 0.2239 0.2256 0.3003 4.58e-21 6hsp:B
3 7pyt:B 392 246 0.1807 0.1811 0.2886 3.89e-19 7pyt:D, 7yxm:B, 7yxm:D
4 6esq:A 392 376 0.2595 0.2602 0.2713 8.17e-18 6esq:B, 6esq:C, 6esq:D
5 4yzo:C 347 368 0.2392 0.2709 0.2554 6.99e-15 4yzo:D
6 5lnq:A 430 197 0.1247 0.1140 0.2487 3.55e-10 5lnq:B, 5lnq:D, 5lot:A, 5lot:B, 5lot:D, 3zbn:A, 3zbn:B, 3zbn:D
7 5mg5:L 396 132 0.1043 0.1035 0.3106 5.43e-05 5mg5:C, 5mg5:O, 5mg5:R
8 5xtc:i 347 32 0.0331 0.0375 0.4062 0.67 5xtd:i, 5xth:i, 5xti:i, 5xti:Bi
9 5lal:B 155 57 0.0382 0.0968 0.2632 1.2 5lal:A
10 1x7p:A 265 168 0.1221 0.1811 0.2857 6.3 1x7p:B
11 3fbu:A 166 24 0.0229 0.0542 0.3750 6.4
12 6rjm:B 456 87 0.0687 0.0592 0.3103 7.8 6rjm:A, 6rjo:A, 6rjo:B, 6rk2:A, 6rk2:B
13 4uy7:A 327 52 0.0433 0.0520 0.3269 9.2 6fnq:A, 6fnq:B, 6fnr:A, 6fnr:B, 6fns:A, 6fns:B, 6fnt:A, 6fnt:B, 4pin:A, 4pin:B, 4pio:A, 4pio:B, 4pip:A, 4pip:B, 4pip:C, 4pip:D, 4uy5:A, 4uy6:A, 4uy7:B
14 7mcs:G 358 42 0.0382 0.0419 0.3571 9.9

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218