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BioLiP
>protein
SQVQSGILPEHCRAAIWIEANVKGDVNALRECSKVFADKLAGFEAQFPDAHLGAVVAFGHDTWRALSGGVGAEELKDFTP
YGKGLAPATQYDVLIHILSLRHDVNFSVAQAAMAAFGDAVEVKEEIHGFRWVEERDLSGFVDGTENPAGEETRREVAVIK
DGVDAGGSYVFVQRWEHNLKQLNRMSVHDQEMMIGRTKVANEEIDGDERPETSHLTRVDLKENGKGLKIVRQSLPYGTAS
GTHGLYFCAYCARLYNIEQQLLSMFGDTDGKRDAMLRFTKPVTGGYYFAPSLDKLLAL

The query sequence (length=298) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 5vj0:D 300 298 1.0000 0.9933 1.0000 0.0 5gt2:A, 5gt2:B, 5gt2:C, 5gt2:D, 5vj0:A, 5vj0:B, 5vj0:C
2 6fiy:B 303 298 0.8792 0.8647 0.8792 0.0 6fiy:A, 6fks:A, 6fks:B, 6fkt:A, 6fkt:B, 6fl2:A, 6fl2:B, 6rpd:A, 6rpd:B, 6rpe:A, 6rpe:B, 6rqy:A, 6rqy:B, 6rr1:A, 6rr1:B, 6rr4:A, 6rr4:B, 6rr5:A, 6rr5:B, 6rr6:A, 6rr6:B, 6rr8:A, 6rr8:B
3 7o9j:B 307 308 0.4732 0.4593 0.4578 1.58e-88 7o9j:A, 7o9l:A, 7o9l:B, 7odz:A, 7odz:B, 8ohy:A
4 5de0:B 298 290 0.4396 0.4396 0.4517 3.38e-78 5de0:A, 5de0:C, 5de0:D
5 7yzt:A 306 298 0.3893 0.3791 0.3893 2.17e-60 7yzt:B, 7yzt:C
6 2iiz:A 306 302 0.4027 0.3922 0.3974 4.51e-60
7 7bok:A 309 254 0.3289 0.3172 0.3858 7.77e-50 7bok:B, 7bok:C, 7bok:D, 7bok:E, 7bok:F
8 3qns:A 311 253 0.3054 0.2926 0.3597 5.43e-45 4hov:A, 4hov:B, 4hov:C, 3qnr:A, 3qnr:B, 3qnr:C, 3vec:A, 3vec:B, 3vec:C, 3ved:A, 3ved:B, 3ved:C, 3vee:A, 3vee:B, 3vee:C, 3vef:A, 3vef:B, 3vef:C, 3veg:A, 3veg:B, 3veg:C
9 4gu7:A 310 298 0.3456 0.3323 0.3456 6.91e-45 4gu7:B, 4gu7:C, 4gu7:D, 8pws:A, 8pws:B, 8pws:C, 8pws:D, 8pws:E, 8pws:F, 8pwy:A, 8pwy:B, 8pwy:C, 8pwy:D, 8pwy:E, 8pwy:F, 7qze:A, 7qze:B, 7qze:C, 7qze:D, 7qze:E, 7qze:F, 7qzf:A, 7qzf:B, 7qzf:C, 7qzf:D, 7qzf:E, 7qzf:F, 7qzg:A, 7qzg:B, 7qzg:C, 7qzg:D, 7qzg:E, 7qzg:F, 7qzh:A, 7qzh:B, 7qzh:C, 7qzh:D, 7qzh:E, 7qzh:F, 8rwy:A, 8rwy:B, 8rwy:C, 8rwy:D, 8rwy:E, 8rwy:F, 6yr4:A, 6yr4:B, 6yr4:C, 6yr4:D, 6yr4:E, 6yr4:F, 6yrc:A, 6yrc:B, 6yrc:C, 6yrc:D, 6yrc:E, 6yrc:F, 6yrd:A, 6yrd:B, 6yrd:C, 6yrd:D, 6yrd:E, 6yrd:F, 6yrj:A, 6yrj:B, 6yrj:C, 6yrj:D, 6yrj:E, 6yrj:F, 7zmj:A, 7zmj:B, 7zmj:C, 7zmj:D, 7zmj:E, 7zmj:F
10 8u4z:A 313 290 0.3121 0.2971 0.3207 1.34e-43
11 7ylo:A 311 270 0.2718 0.2605 0.3000 2.13e-30 7ylo:B
12 7qyq:B 284 237 0.2450 0.2570 0.3080 9.33e-25 7qyq:A, 7qyq:C, 7qyq:D, 7qyz:A, 7qza:A, 7qza:B, 7qza:C, 7qza:D, 7qza:E, 7qza:F, 7qza:G, 7qza:H
13 6jbn:A 391 183 0.1611 0.1228 0.2623 2.77e-06 6jbn:B
14 4gs1:B 376 157 0.1510 0.1197 0.2866 2.31e-05 4gs1:A
15 8rgs:A 366 138 0.1477 0.1202 0.3188 6.13e-05 4grc:A, 6i43:A, 6i43:B, 6i7c:A, 6i7c:B, 6i7z:A, 6i7z:B, 6i8e:A, 6i8e:B, 6i8i:A, 6i8i:B, 6i8j:A, 6i8j:B, 6i8k:A, 6i8k:B, 6i8o:A, 6i8o:B, 6i8p:A, 6i8p:B, 6i8q:A, 6i8q:B, 6i91:A, 6i91:B, 6ibn:A, 6ibn:B, 8olh:A, 8olh:B, 8olp:A, 8olp:B, 8omc:A, 8omc:B, 8pxp:A, 8pxp:B, 6q31:A, 6q31:B, 6q34:A, 6q34:B, 6q3d:A, 6q3d:B, 6q3e:A, 6q3e:B, 8rgs:B, 8rgw:A, 8rgw:B, 8rgy:A, 8rgy:B, 6tb8:A, 6tb8:B
16 4gt2:A 371 152 0.1577 0.1267 0.3092 6.30e-05 4gt2:B, 4gt2:E, 4gt2:G, 6gzw:A, 6gzw:B, 5map:A, 5map:B, 5mjh:A, 5mjh:B
17 7dlk:A 363 176 0.1477 0.1212 0.2500 3.34e-04 7dlk:B, 7dlk:C, 7dlk:D, 7dlk:E, 7dlk:F, 7e5q:A, 7e5q:B, 6kmm:A, 6kmm:B, 6kmm:C, 6kmm:D, 6kmm:E, 6kmm:F, 6kmn:A, 6kmn:B, 6kmn:C, 6kmn:D, 7pkx:A, 7pkx:B, 7pl0:A, 7pl0:B, 7pl0:C, 7pl0:D
18 5fw4:A 368 134 0.1174 0.0951 0.2612 0.001 5fw4:B
19 2y4e:A 384 243 0.1913 0.1484 0.2346 0.001 3o72:A, 3o72:B, 3o72:C, 3o72:D, 2y4e:B, 2y4f:A, 2y4f:B
20 8fjq:B 361 236 0.1879 0.1551 0.2373 0.013 8fjq:A, 8fjr:A, 8fjr:B, 5jxu:A, 5jxu:B, 7rmu:A
21 4wj3:B 456 64 0.0671 0.0439 0.3125 0.33 4wj3:K, 4wj3:H, 4wj3:E
22 8ck9:A 374 69 0.0738 0.0588 0.3188 0.38
23 6zu5:SDD 59 46 0.0470 0.2373 0.3043 0.50
24 8fha:C 148 120 0.1074 0.2162 0.2667 2.8 8fha:A, 8fha:B, 8fha:D
25 5hnw:K 329 90 0.0705 0.0638 0.2333 3.1 5hle:A, 5hny:K, 3x2t:B
26 4yec:B 228 49 0.0604 0.0789 0.3673 3.1
27 3x2t:A 311 90 0.0705 0.0675 0.2333 4.4 2kin:A, 3kin:A, 3kin:C
28 4lq0:A 298 50 0.0470 0.0470 0.2800 5.1
29 3h0l:B 410 36 0.0436 0.0317 0.3611 5.5 3h0l:E, 3h0l:H, 3h0l:K, 3h0l:N, 3h0l:Q, 3h0l:T, 3h0l:W, 3h0m:B, 3h0m:E, 3h0m:H, 3h0m:K, 3h0m:N, 3h0m:Q, 3h0m:T, 3h0m:W, 3h0r:B, 3h0r:E, 3h0r:H, 3h0r:K, 3h0r:N, 3h0r:Q, 3h0r:T, 3h0r:W
30 6pwv:D 357 80 0.0738 0.0616 0.2750 5.5 7ud5:M
31 2d40:A 289 37 0.0503 0.0519 0.4054 6.2 2d40:B, 2d40:C, 2d40:D
32 6qzo:A 361 75 0.0772 0.0637 0.3067 6.8 6qzo:B, 6qzo:C, 6qzo:D, 6qzo:E, 6qzo:F, 6qzo:G, 6qzo:H

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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