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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
SQSGPLPKPSLQALPSSLVPLEKPVTLRCQGPPGVDLYRLEKLSSSRYQDQAVLFIPAMKRSLAGRYRCSYQNGSLWSLP
SDQLELVATGVFAKPSLSAQPGSGGDVTLQCQTRYGFDQFALYKEGDPERWYRASFPIITVTAAHSGTYRCYSFSSRDPY
LWSAPSDPLELVVTGTSAA

The query sequence (length=179) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 5ou9:A 179 179 1.0000 1.0000 1.0000 9.01e-130 5ou8:B, 5ou8:A, 5ou9:B
2 1efx:D 197 198 0.3911 0.3553 0.3535 6.97e-25
3 1efx:D 197 100 0.2179 0.1980 0.3900 2.33e-12
4 1efx:D 197 40 0.0838 0.0761 0.3750 6.4
5 5eiv:A 181 181 0.3296 0.3260 0.3260 2.08e-15 5cjb:A, 5eiv:B
6 5eiv:A 181 93 0.2067 0.2044 0.3978 4.29e-07 5cjb:A, 5eiv:B
7 3kgr:A 99 95 0.2067 0.3737 0.3895 1.28e-13 3kgr:B
8 3kgr:A 99 96 0.1899 0.3434 0.3542 5.38e-06 3kgr:B
9 2cdo:A 138 72 0.1061 0.1377 0.2639 1.3 2cdo:D, 2cdo:C, 2cdo:B, 2cdp:A, 2cdp:D, 2cdp:B, 2cdp:C
10 6exn:J 342 37 0.0782 0.0409 0.3784 4.7 5lj3:J, 5lj5:J, 5mps:J, 5mq0:J
11 7waq:D 365 62 0.0950 0.0466 0.2742 5.3 7vb8:B, 7vb8:A, 7waq:B, 7waq:A, 7waq:C, 7war:B, 7war:A, 7was:A, 7was:B
12 4ybh:A 302 74 0.1117 0.0662 0.2703 6.5 4p2y:A
13 7za1:E 251 66 0.1061 0.0757 0.2879 7.0 7za1:F, 7za1:H, 7za2:E, 7za2:G, 7za3:E, 7za3:G
14 8h72:A 328 54 0.0782 0.0427 0.2593 7.6 8h72:B
15 5j6g:C 276 18 0.0559 0.0362 0.5556 9.0 5j6g:A, 5j6h:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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