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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
SQRITIDPVTRIEGHLRIDCEIENGVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQRICGVCTTTHAISSVRAAESALN
IDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDITSALKADPAKASAMLNGVSTWHLNSAEEFTKVQNKIKDLVAS
GQLGIFANGCWGHPAMQLPPEVNLIAVAHYLQALECQRDANRVVALLGGKTPHIQNLAVGGVANPINLDGLGVLNLERLM
YIKSFIDKLSDFVEQVYKVDTAVIAAFYPEWLERGQGAVNYLSAPEFPTDGKNGSFLFPGGYITDADLSTYRPITSHSDE
YLIKGIQESAKHAWYKDEAPQAPWEGTTVPDYTGWSDDGKYSWVKAPTFYGKTVEVGPLANMLCKLAAKRESTHAKLNEI
VAIYTKLTGKTIEVAQLHSTLGRIIGRTVHCCELQNVLQDQYNALIVNIGKGDHTTFVKPDIPATGEFKGVGFLEAPRGM
LSHWMVIKDGIISNYQAVVPSTWNSGPRNFNDEVGPYERSLVGTPIADPNKPLEVVRTIHSFDPCMSCAVH

The query sequence (length=551) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6ehq:L 551 551 0.9328 0.9328 0.9328 0.0 6ehq:M, 6ehs:L, 6ehs:M, 6en9:L, 6en9:M, 6g7m:L, 6g7m:M, 6gam:L, 6gam:M, 6gan:L, 6gan:M, 7nem:L, 7nem:M, 6syo:LLL, 6syo:MMM, 6syx:LLL, 6syx:MMM, 6szd:LLL, 6szd:MMM, 6szk:LLL, 6szk:MMM, 7vxq:A, 7vxq:C, 5xvb:L, 5xvb:M, 5xvc:L, 5xvc:M, 5xvd:L, 5xvd:M
2 3myr:D 561 571 0.4900 0.4813 0.4729 3.90e-179 3myr:B, 3myr:F, 3myr:H
3 4c3o:A 583 582 0.4628 0.4374 0.4381 1.35e-162 4c3o:C, 4c3o:E
4 1frv:B 530 554 0.4319 0.4491 0.4296 1.20e-154 1frv:D, 2frv:L, 2frv:B, 2frv:D, 2frv:F, 2frv:H, 2frv:J, 1yq9:H, 1yq9:I
5 1h2a:L 534 555 0.4410 0.4551 0.4378 8.23e-154 1h2r:L, 4u9h:L, 4u9i:L, 1ubh:L, 1ubj:L, 1ubk:L, 1ubl:L, 1ubm:L, 1ubo:L, 1ubr:L, 1ubt:L, 1ubu:L, 8w6x:L, 1wuh:L, 1wui:L, 1wuj:L, 1wuk:L, 1wul:L, 5xle:L, 5xlf:L, 5xlg:L, 5xlh:L, 5y4n:L
6 3ayx:A 595 590 0.4646 0.4303 0.4339 1.26e-152 3ayx:C, 3ayz:A, 3ayz:C, 5y34:A, 5y34:C
7 4iub:L 602 593 0.4592 0.4203 0.4266 1.97e-151 5d51:L, 4iuc:L, 4iud:L, 5mdj:L, 5mdk:L, 5mdl:L, 7odg:L, 7odh:L, 8pou:L, 8pov:L, 8pow:L, 8pox:L, 8poz:L, 3rgw:L, 4ttt:L
8 5a4f:L 581 577 0.4338 0.4114 0.4142 2.53e-151 5a4f:M, 5a4i:L, 5a4i:M, 5a4m:L, 5a4m:M, 5adu:L, 5adu:M, 6fpi:L, 6fpi:M, 6fpo:L, 6fpo:M, 6fpw:L, 6fpw:M, 6g7r:L, 6g7r:M, 6g94:L, 6g94:M, 6g94:J, 6g94:K, 6gal:L, 6gal:M, 4gd3:L, 4gd3:M, 4gd3:J, 4gd3:K, 5jrd:L, 5jrd:M, 5lmm:L, 5lmm:M, 5lry:L, 5lry:M, 6rp2:L, 6rp2:M, 4ue3:LLL, 4ue3:MMM, 3uqy:L, 3uqy:M, 3usc:L, 3usc:M, 3use:L, 3use:M
9 3cur:H 545 564 0.4374 0.4422 0.4273 6.75e-148 3cur:I, 3cur:J, 3cus:Q, 3cus:R, 3cus:S, 1frf:L, 3h3x:Q, 3h3x:R, 3h3x:S, 4ucq:Q, 4ucq:R, 4ucq:S, 4ucw:Q, 4ucw:R, 4ucw:S, 4ucx:Q, 4ucx:R, 4ucx:S, 4ud2:S, 4ud2:Q, 4ud2:R, 4ud6:Q, 4ud6:R, 4ud6:S, 4ue2:Q, 4ue2:R, 4ue2:S, 4ue6:R, 4ue6:Q, 4ue6:S, 4ueq:Q, 4ueq:R, 4ueq:S, 4ueq:T, 4ueq:U, 4ueq:V, 4uew:Q, 4uew:R, 4uew:S, 4upe:Q, 4upe:R, 4upe:S, 4upv:Q, 4upv:R, 4uql:Q, 4uql:R, 4uqp:Q, 4uqp:R, 4urh:Q, 4urh:S, 4urh:R, 1yqw:Q, 1yqw:R, 1yqw:S, 1yrq:H, 1yrq:I, 1yrq:J, 1yrq:K, 1yrq:M, 1yrq:N
10 1e3d:B 537 553 0.4229 0.4339 0.4213 1.42e-144 1e3d:D
11 6rtp:B 484 550 0.3466 0.3946 0.3473 1.24e-92 5jsh:B, 5jsk:B, 5jsu:B, 5jsy:B, 5jt1:B, 6ru9:B, 6ruc:B, 2wpn:B, 6z7r:B, 6z7r:D, 6z8j:B, 6z8j:D, 6z8m:B, 6z8o:B, 6z8o:D, 6z9g:B, 6z9g:D, 6z9g:F, 6z9g:H, 6z9o:B, 6za1:B, 3ze6:B, 3ze7:B, 3ze8:B, 3ze9:B, 3zea:B
12 4kl8:L 489 552 0.3321 0.3742 0.3315 1.88e-85 1cc1:L, 4kl8:M, 4kn9:L, 4kn9:M, 4ko1:L, 4ko1:M, 4ko2:L, 4ko2:M, 4ko3:L, 4ko3:M, 4ko4:L, 4ko4:M
13 8dqv:A 513 567 0.2976 0.3197 0.2892 2.80e-53 8dqv:C, 7utd:A, 7utd:C, 7utd:E, 7utd:G, 7utd:I, 7utd:K, 7utd:M, 7utd:O, 7uur:C, 7uur:F, 7uus:A, 7uus:C, 7uus:E, 7uus:G, 7uus:I, 7uus:K, 7uus:M, 7uus:O
14 5aa5:G 561 604 0.2759 0.2709 0.2517 2.48e-37 5aa5:C, 5aa5:E, 5aa5:K, 5aa5:I, 5aa5:L
15 4ci0:A 385 250 0.1397 0.2000 0.3080 8.24e-21 4omf:A
16 7t2r:D 447 563 0.2160 0.2662 0.2114 1.63e-20 7t2r:I, 7t30:D, 7t30:I
17 5odc:F 447 115 0.0672 0.0828 0.3217 2.66e-17 5odc:L, 5odh:F, 5odh:L, 5odi:F, 5odi:L, 5odq:F, 5odq:L, 5odr:F, 5odr:L
18 5odc:F 447 88 0.0526 0.0649 0.3295 1.96e-04 5odc:L, 5odh:F, 5odh:L, 5odi:F, 5odi:L, 5odq:F, 5odq:L, 5odr:F, 5odr:L
19 5xf9:D 455 130 0.0672 0.0813 0.2846 1.59e-13 5xf9:H, 5xfa:D, 5xfa:H
20 5xf9:D 455 142 0.0726 0.0879 0.2817 2.54e-05 5xf9:H, 5xfa:D, 5xfa:H
21 6qgr:A 437 105 0.0599 0.0755 0.3143 3.46e-13 6qgt:A, 6qii:A
22 6qgr:A 437 222 0.1107 0.1396 0.2748 3.33e-05 6qgt:A, 6qii:A
23 7z0s:E 532 95 0.0508 0.0526 0.2947 2.52e-08 7z0t:E
24 6cfw:L 374 74 0.0436 0.0642 0.3243 1.03e-06
25 6cfw:L 374 103 0.0563 0.0829 0.3010 0.036
26 8b9z:D 430 93 0.0490 0.0628 0.2903 0.002 8esz:S2
27 7aqr:D 385 93 0.0472 0.0675 0.2796 0.012 7a23:G, 7a24:G, 7ar7:D, 7ar8:D, 7arb:D, 8bee:D, 8bpx:D, 8bq5:D, 8bq6:D, 8e73:S2, 6x89:S2
28 7arc:D 395 93 0.0454 0.0633 0.2688 0.023 7ard:D
29 8fpj:A 1345 84 0.0508 0.0208 0.3333 0.26
30 6rfr:C 438 82 0.0381 0.0479 0.2561 0.30 7o6y:C, 7o71:C, 6rfq:C, 6rfs:C, 6y79:C, 6yj4:D
31 3qph:A 335 48 0.0272 0.0448 0.3125 0.45 2f5t:X
32 1ah5:A 299 84 0.0399 0.0736 0.2619 0.73 1gtk:A, 1pda:A, 1ypn:A, 2ypn:A
33 7zmb:C 441 82 0.0399 0.0499 0.2683 0.95 7zm7:C, 7zmg:C
34 2fo1:A 439 72 0.0381 0.0478 0.2917 0.99 3brd:A, 3brf:A, 1ttu:A
35 7b93:D 430 93 0.0454 0.0581 0.2688 2.2 7ak5:D, 8c2s:D, 8ca3:D, 8ca5:D, 6g2j:D, 6g72:D, 5gpn:Z, 5gup:C, 8iao:D, 8iap:D, 8ib4:D, 8ib5:D, 8ib9:D, 8iba:D, 8ic2:D, 8ic3:D, 5lc5:D, 5ldw:D, 5ldx:D, 5lnk:4, 8olt:D, 8om1:D, 7psa:D, 8pw5:D1, 8pw6:D1, 8pw7:D1, 8q0a:D, 8q0f:D, 8q0m:D, 8q0o:D, 8q0q:D, 8q1y:D, 8q25:D, 8q45:D, 8q46:D, 8q47:D, 8q48:D, 8q49:D, 8q4a:D, 6qa9:S2, 6qc4:S2, 6qc7:S2, 7qsd:D, 7qsk:D, 7qsl:D, 7qsm:D, 7qso:D, 7r41:D, 7r42:D, 7r43:D, 7r44:D, 7r45:D, 7r46:D, 7r47:D, 7r48:D, 7r4c:D, 7r4d:D, 7r4f:D, 7r4g:D, 8rgp:D, 8rgq:D, 8rgr:D, 8rgt:D, 8ud1:1D, 8uep:1D, 8ueq:1D, 8uer:1D, 8ues:1D, 8uet:1D, 8ueu:1D, 8uev:1D, 8uew:1D, 8uex:1D, 8uey:1D, 8uez:1D, 8ugh:1D, 8ugi:1D, 8ugj:1D, 8ugn:1D, 8ugn:5D, 8ugr:1D, 7v2c:Q, 7v2d:Q, 7v2e:Q, 7v2f:Q, 7v2h:Q, 7v2k:Q, 7v2r:Q, 7v30:Q, 7v31:Q, 7v32:Q, 7v33:Q, 7v3m:Q, 7vb7:Q, 7vbn:Q, 7vbz:Q, 7vwj:Q, 7vxp:Q, 7vxu:Q, 7vy8:Q, 7vya:Q, 7vyf:Q, 7vyh:Q, 7vyn:Q, 7vz1:Q, 7vzv:Q, 7vzw:Q, 7w00:Q, 7w0h:Q, 7w0r:Q, 7w0y:Q, 7w1o:Q, 7w1p:Q, 7w1t:Q, 7w1u:Q, 7w1v:Q, 7w1z:Q, 7w20:Q, 7w2k:Q, 7w2l:Q, 7w2r:Q, 7w2u:Q, 7w2y:Q, 7w31:Q, 7w32:Q, 7w35:Q, 7w4c:Q, 7w4d:Q, 7w4e:Q, 7w4f:Q, 7w4g:Q, 7w4j:Q, 7w4k:Q, 7w4l:Q, 7w4m:Q, 7w4n:Q, 7w4q:Q, 5xtb:Q, 7zd6:4, 7zdh:4, 7zdj:4, 7zdm:4, 7zdp:4, 7zeb:4, 6zkc:4, 6zkd:4, 6zke:4, 6zkf:4, 6zkg:4, 6zkh:4, 6zki:4, 6zkj:4, 6zkk:4, 6zkl:4, 6zkm:4, 6zkn:4, 6zko:4, 6zkp:4, 6zkq:4, 6zkr:4, 6zks:4, 6zkt:4, 6zku:4, 6zr2:D, 6ztq:D
36 1fa2:A 498 217 0.0853 0.0944 0.2166 2.4 5wqu:A
37 8gy2:A 723 125 0.0544 0.0415 0.2400 2.5
38 7aml:A 596 114 0.0581 0.0537 0.2807 2.7 7amk:A, 7amk:B, 7aml:D
39 8iuf:S2 394 93 0.0381 0.0533 0.2258 6.6 8j9h:S2, 8j9i:S2, 8j9j:S2
40 8cad:A 636 61 0.0218 0.0189 0.1967 8.1 8cad:B, 8cad:C, 8cad:D, 8cad:E, 8cad:F
41 3h0g:M 1476 42 0.0309 0.0115 0.4048 9.9

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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