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BioLiP
>protein
SQQVWKLVIITEEILLKKVSKIIKEAGASGYTVLAAAGEGSSHAYSNIKFEVLTASRELADQIQDKVVAKYFDDYSCITY
ISTVEAL

The query sequence (length=87) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6ntb:C 104 98 1.0000 0.8365 0.8878 5.76e-55 6mm2:A, 6ntb:A, 6ntb:B
2 6mmo:A 91 87 0.9770 0.9341 0.9770 3.14e-54 6mmc:A, 6mmo:B, 6mmo:C, 6mmo:E, 6mmo:D, 6mmo:F, 6mmq:A, 6mmq:D, 6mmq:B, 6mmq:C, 6mmq:F, 6mmq:E
3 7r30:B 102 82 0.5517 0.4706 0.5854 5.69e-30 5o3q:A, 5o3q:C, 5o3q:B, 5o3r:A, 5o3r:B, 5o3r:C, 7obj:C, 7r2y:A, 7r2y:B, 7r2z:A, 7r2z:B, 7r2z:C, 7r30:A, 7r30:C, 7r32:A
4 7cyf:D 109 98 0.5517 0.4404 0.4898 1.34e-27 7cyf:E, 7cyf:F, 7egk:D, 7egk:F, 7egk:B, 7obj:A, 7obj:B, 7r2y:C, 7r31:A, 7r31:B, 7r31:C, 7r32:B, 7r32:C
5 1z82:A 312 63 0.2299 0.0641 0.3175 0.15 1z82:B
6 7o4x:A 103 39 0.1609 0.1359 0.3590 0.31
7 3oxk:A 115 68 0.2414 0.1826 0.3088 0.76 3oj7:A, 3omf:A
8 5d4n:B 90 81 0.2184 0.2111 0.2346 2.0 5drk:C
9 5xkt:A 199 26 0.1034 0.0452 0.3462 2.5 5xkt:B
10 4zah:A 370 68 0.2184 0.0514 0.2794 2.6 4zah:B, 4zah:C, 4zah:D, 4zah:E, 4zah:F, 4zah:G, 4zah:H
11 6g9x:B 368 45 0.2069 0.0489 0.4000 3.0 6zgr:B, 6zgs:B, 6zgt:B, 6zgu:B
12 6zgs:A 404 45 0.2069 0.0446 0.4000 3.0 6g9x:A, 6zgr:A, 6zgt:A, 6zgu:A
13 4wa6:D 415 25 0.1149 0.0241 0.4000 4.5 4w4u:D
14 4fjc:E 434 25 0.1149 0.0230 0.4000 4.5 3m99:A, 3mhh:A
15 3mhs:A 455 25 0.1149 0.0220 0.4000 4.5 6aqr:A, 4fip:A, 4fip:E, 4fjc:A, 4fk5:A, 6t9l:K, 4w4u:A, 4wa6:A, 4zux:U, 4zux:Z, 4zux:e, 4zux:j
16 4eo3:A 321 23 0.1034 0.0280 0.3913 5.6 4eo3:B
17 2bgl:A 267 46 0.1839 0.0599 0.3478 6.6 2bgm:A
18 2aa4:A 289 36 0.1494 0.0450 0.3611 6.7 2aa4:B
19 2e87:A 356 66 0.1724 0.0421 0.2273 7.3
20 7zm7:B 456 41 0.1954 0.0373 0.4146 8.3 7zmb:B, 7zmg:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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