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BioLiP
>protein
SQQVWKLVIITEEILLKKVSKIIKEAGASGYTVLAAAGEGSRNVRSTSHAYSNIKFEVLTASRELADQIQDKVVAKYFDD
YSCITYISTVEALRAHKF

The query sequence (length=98) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6ntb:C 104 103 1.0000 0.9423 0.9515 1.56e-65 6mm2:A, 6ntb:A, 6ntb:B
2 6mmo:A 91 98 0.9184 0.9890 0.9184 3.72e-58 6mmc:A, 6mmo:B, 6mmo:C, 6mmo:E, 6mmo:D, 6mmo:F, 6mmq:A, 6mmq:D, 6mmq:B, 6mmq:C, 6mmq:F, 6mmq:E
3 7cyf:D 109 103 0.5714 0.5138 0.5437 9.71e-35 7cyf:E, 7cyf:F, 7egk:D, 7egk:F, 7egk:B, 7obj:A, 7obj:B, 7r2y:C, 7r31:A, 7r31:B, 7r31:C, 7r32:B, 7r32:C
4 7r30:B 102 93 0.5000 0.4804 0.5269 3.24e-30 5o3q:A, 5o3q:C, 5o3q:B, 5o3r:A, 5o3r:B, 5o3r:C, 7obj:C, 7r2y:A, 7r2y:B, 7r2z:A, 7r2z:B, 7r2z:C, 7r30:A, 7r30:C, 7r32:A
5 7o4x:A 103 29 0.1122 0.1068 0.3793 0.36
6 4ojz:A 706 77 0.2041 0.0283 0.2597 1.6 4nei:A, 4nei:B, 4ojz:B, 4ok2:A, 4ok2:B, 4ok4:A, 4ok4:B
7 1z82:A 312 67 0.1633 0.0513 0.2388 2.2 1z82:B
8 5xkt:A 199 26 0.0918 0.0452 0.3462 3.9 5xkt:B
9 9j4i:C 403 66 0.2143 0.0521 0.3182 5.3 9j4i:B, 9j4i:A, 9j4j:A, 9j4j:B, 9j4j:C, 9j4k:B, 9j4k:A, 9j4k:C
10 4wa6:D 415 25 0.1020 0.0241 0.4000 6.0 4w4u:D
11 4fjc:E 434 25 0.1020 0.0230 0.4000 6.0 3m99:A, 3mhh:A
12 3mhs:A 455 25 0.1020 0.0220 0.4000 6.0 6aqr:A, 4fip:A, 4fip:E, 4fjc:A, 4fk5:A, 6t9l:K, 4w4u:A, 4wa6:A, 4zux:U, 4zux:Z, 4zux:e, 4zux:j
13 5hev:F 210 70 0.2347 0.1095 0.3286 9.1 5hev:A, 5hev:B, 5hev:C
14 4eo3:A 321 23 0.0918 0.0280 0.3913 9.3 4eo3:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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