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BioLiP
>protein
SQQVWKLVIITEEILLKKVSKIIKEAGASGYTVLAAAGEGSAYSNIKFEVLTASRELADQIQDKVVAKYFDDYSCITYIS
TVEAL

The query sequence (length=85) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6mmo:A 91 85 1.0000 0.9341 1.0000 2.87e-56 6mmc:A, 6mmo:B, 6mmo:C, 6mmo:E, 6mmo:D, 6mmo:F, 6mmq:A, 6mmq:D, 6mmq:B, 6mmq:C, 6mmq:F, 6mmq:E
2 6ntb:C 104 98 1.0000 0.8173 0.8673 8.44e-53 6mm2:A, 6ntb:A, 6ntb:B
3 7r30:B 102 82 0.5529 0.4608 0.5732 7.57e-28 5o3q:A, 5o3q:C, 5o3q:B, 5o3r:A, 5o3r:B, 5o3r:C, 7obj:C, 7r2y:A, 7r2y:B, 7r2z:A, 7r2z:B, 7r2z:C, 7r30:A, 7r30:C, 7r32:A
4 7cyf:D 109 98 0.5529 0.4312 0.4796 2.20e-26 7cyf:E, 7cyf:F, 7egk:D, 7egk:F, 7egk:B, 7obj:A, 7obj:B, 7r2y:C, 7r31:A, 7r31:B, 7r31:C, 7r32:B, 7r32:C
5 7o4x:A 103 39 0.1765 0.1456 0.3846 0.091
6 1z82:A 312 59 0.1765 0.0481 0.2542 0.12 1z82:B
7 5xkt:A 199 26 0.1059 0.0452 0.3462 2.4 5xkt:B
8 6n7e:C 302 54 0.2118 0.0596 0.3333 3.3 6n7e:B
9 2e87:A 356 64 0.1765 0.0421 0.2344 4.0
10 4wa6:D 415 25 0.1176 0.0241 0.4000 4.2 4w4u:D
11 4fjc:E 434 25 0.1176 0.0230 0.4000 4.2 3m99:A, 3mhh:A
12 3mhs:A 455 25 0.1176 0.0220 0.4000 4.3 6aqr:A, 4fip:A, 4fip:E, 4fjc:A, 4fk5:A, 6t9l:K, 4w4u:A, 4wa6:A, 4zux:U, 4zux:Z, 4zux:e, 4zux:j
13 4eo3:A 321 23 0.1059 0.0280 0.3913 5.0 4eo3:B
14 1ovm:A 535 45 0.1882 0.0299 0.3556 5.8 1ovm:B, 1ovm:C, 1ovm:D
15 5kca:A 807 35 0.1412 0.0149 0.3429 6.7 5kc8:A
16 7w1y:2 706 23 0.0824 0.0099 0.3043 8.9 7pfo:2, 7plo:2, 8q6o:A, 8q6o:2, 8q6p:2, 7w1y:A, 6xtx:2, 6xty:2

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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