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BioLiP
>protein
SQPVFASPLNVEKRRLNEERALMQAQKANIQLPPNYGDMDLILFPEGSLKNSNNTVIPQSHLKGKSVALYFADGADPKCA
SLLPFLLNYYRTMNEGGANQKIEIIFVSLDRDREAFESHRAHMPWLSIDLENPLTEILKRHFRVMKEYEVPTYGYGSRTG
VPSVIVIGSDGREAQFLPICSGLEEGDRALLRWDWRNTKFA

The query sequence (length=201) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7miz:c 201 201 1.0000 1.0000 1.0000 3.10e-152 7miz:d, 7miz:e, 7miz:f, 7miz:g, 7miz:h, 7miz:j, 7miz:o, 7miz:p, 7miz:q, 7miz:r, 7miz:s, 7miz:t, 7miz:u, 7miz:v, 7miz:n, 7miz:m, 7tnq:c, 7tnq:d, 7tnq:o, 7tnq:p, 7tnq:r, 7tnq:t, 7tnq:u, 7tnq:v, 7tnq:e, 7tnq:m, 7tnq:f, 7tnq:h, 7tnq:i, 7tns:c, 7tns:d, 7tns:o, 7tns:s, 7tns:t, 7tns:v, 7tns:y, 7tns:m, 7tns:f, 7tns:g, 7tns:h
2 7miz:x 143 152 0.2687 0.3776 0.3553 1.05e-25 7miz:k, 7tnq:w, 7tnq:x
3 3s9f:A 144 101 0.1642 0.2292 0.3267 5.82e-09
4 1i5g:A 144 71 0.1095 0.1528 0.3099 2.37e-07
5 6gxg:B 147 111 0.1493 0.2041 0.2703 1.06e-06 6gxg:A, 6gxg:C, 6gxy:A, 6gxy:B, 6gxy:C
6 6ahd:1 1048 86 0.1144 0.0219 0.2674 1.6 7abg:u, 7abh:u, 7abi:u, 6ah0:1, 7b0i:C, 7b91:C, 7b9c:C, 8ch6:C, 7dvq:1, 6en4:C, 7evo:1, 6ff4:u, 6ff7:u, 8h6e:2G, 8h6j:2G, 8h6k:2G, 8h6l:2G, 8hk1:1, 8i0p:1, 8i0r:1, 8i0s:1, 8i0t:1, 8i0u:1, 7omf:C, 7onb:C, 7opi:C, 7q3l:A, 7q4o:A, 7q4p:A, 8qo9:B1, 7qtt:C, 6qx9:B1, 8qxd:B1, 8qzs:B1, 8r08:B1, 8r09:B1, 8r0a:B1, 8r0b:B1, 8rm5:B1, 7vpx:1, 6y50:u, 6y5q:u, 8y7e:1, 5z56:1, 5z57:1, 5z58:1, 5zya:C
7 2yi9:A 771 73 0.1045 0.0272 0.2877 2.6 2yi9:B, 2yi9:C, 2yi9:D, 2yi9:E, 3zed:A, 3zed:B, 3zed:C
8 4yz9:A 381 19 0.0498 0.0262 0.5263 8.2 4pl4:D, 6w39:A, 6w39:B, 6w3a:A, 6w3a:B, 6w3e:A, 4yz9:B, 4yz9:C, 4yzd:C
9 7bmk:A 406 19 0.0498 0.0246 0.5263 8.3 7bmk:B, 6hv0:A, 6hx1:A, 3p23:A, 3p23:B, 3p23:C, 3p23:D, 4pl3:A, 4pl3:B, 4pl4:A, 4pl4:B, 4pl4:C, 4pl5:B, 4pl5:A, 4pl5:C, 4pl5:D, 4u6r:A, 6urc:A, 6urc:B, 8uvl:A, 6w3e:B, 6w3k:A, 6xdb:A, 6xdd:A, 6xdd:B, 6xdf:A, 4yzc:A, 4yzc:B, 4yzd:A, 4yzd:B, 4z7h:A, 4z7h:B
10 7ljh:A 400 26 0.0647 0.0325 0.5000 8.4 7ljh:B
11 1lkx:C 679 89 0.1045 0.0309 0.2360 9.3 1lkx:A, 1lkx:B, 1lkx:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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