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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
SQLVLILGDQLSPSIAALDGVDKKQDTIVLCEVMAEASYVGHHKKKIAFIFSAMRHFAEELRGEGYRVRYTRIDDADNAG
SFTGEVKRAIDDLTPSRICVTEPGEWRVRSEMDGFAGAFGIQVDIRSDRRFLSSHGEFRNWAAGRKSLTMEYFYREMRRK
TGLLMNGEQPVGGRWNFDRQPARPDLLRPKHPVFAPDKITKEVIDTVERLFPDNFGKLENFGFAVTRTDAERALSAFIDD
FLCNFGATQDAMLQDDPNLNHSLLSFYINCGLLDALDVCKAAERAYHEGGAPLNAVEGFIRQIIGWREYMRGIYWLAGPD
YVDSNFFENDRSLPVFYWTGKTHMNCMAKVITETIENAYAHHIQRLMITGNFALLAGIDPKAVHRWYLEVYADAYEWVEL
PNVIGMSQFADGGFLGTKPYAASGNYINRMSDYCDTCRYDPKERLGDNACPFNALYWDFLARNREKLKSNHRLAQPYATW
ARMSEDVRHDLRAKAAAFLRKLDAAALEH

The query sequence (length=509) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6dd6:A 512 512 1.0000 0.9941 0.9941 0.0 4dja:A, 5kcm:A, 5kcm:B, 5lfa:A
2 3zxs:A 508 507 0.5246 0.5256 0.5266 0.0 3zxs:B, 3zxs:C
3 8ijy:A 501 499 0.4303 0.4371 0.4389 1.02e-141
4 8a1h:A 516 512 0.3870 0.3818 0.3848 6.71e-115 7ykn:A
5 7cpz:A 120 83 0.0550 0.2333 0.3373 0.52
6 3afg:B 507 56 0.0314 0.0316 0.2857 0.64 3afg:A
7 8h61:B 340 130 0.0609 0.0912 0.2385 1.5 7xwu:A, 7xwu:B, 7y0k:A
8 6nts:A 583 70 0.0373 0.0326 0.2714 1.6 6iur:F, 8twe:A
9 8twe:B 423 91 0.0452 0.0544 0.2527 3.4
10 4iof:A 932 38 0.0255 0.0139 0.3421 8.5
11 6rm3:SW0 127 46 0.0255 0.1024 0.2826 8.9
12 3bb0:A 576 42 0.0255 0.0226 0.3095 9.2 1vnc:A, 1vne:A, 1vnf:A, 1vng:A, 1vnh:A, 1vni:A, 1vns:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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