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BioLiP
>protein
SQLLQDYLNWENYILRRVDFPTSYVVEGEVVRIEAMPRLYISGMGGSGVVADLIRDFSLTWNWEVEVIAVKDYFLKARDG
LLIAVSYSGNTIETLYTVEYAKRRRIPAVAITTGGRLAQMGVPTVIVPKASAPRAALPQLLTAALHVVAKVYGIDVKIPE
GLEPPNEALIHKLVEEFQKRPTIIAAESMRGVAYRVKNEFNENAKIEPSVEILPEAHHNWIEGSERAVVALTSPHIPKEH
QERVKATVEIVGGSIYAVEMHPKGVLSFLRDVGIASVKLAEIRGVNPLATPRIDALKRRL

The query sequence (length=300) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 1tzc:A 301 300 1.0000 0.9967 1.0000 0.0 1tzc:B, 1x9h:A, 1x9h:B, 1x9i:A, 1x9i:B
2 7en7:A 191 107 0.1100 0.1728 0.3084 0.012 7en5:A, 7en6:D
3 5i01:A 184 61 0.0633 0.1033 0.3115 0.33 5i01:B, 5i01:C, 5i01:D
4 4amv:A 608 155 0.1233 0.0609 0.2387 0.77 4amv:B, 4amv:C, 7dnr:A, 2j6h:A, 2j6h:B, 1jxa:A, 1jxa:B, 1moq:A, 1mor:A, 1mos:A, 3ooj:A, 3ooj:B, 3ooj:C, 3ooj:D, 3ooj:E, 3ooj:F, 3ooj:G, 3ooj:H, 2vf5:X, 1xff:A, 1xff:B, 1xfg:A, 1xfg:B
5 8tx9:A 190 121 0.1100 0.1737 0.2727 0.96 8tx9:B, 8tx9:C, 8tx9:D
6 7cmy:C 417 50 0.0600 0.0432 0.3600 1.1
7 1x92:B 197 110 0.0967 0.1472 0.2636 1.4 1x92:A
8 7cwd:A 803 61 0.0567 0.0212 0.2787 3.1
9 6vtj:A 472 56 0.0533 0.0339 0.2857 3.4
10 6r4e:A 663 36 0.0467 0.0211 0.3889 5.6 7ndl:A, 7ndl:B, 6r4e:B, 6r4f:A, 6r4f:B, 6r4g:A, 6r4g:B, 6r4h:A, 6r4h:B, 6r4i:A, 6r4i:B, 6r4j:A, 6r4j:B, 6svm:A, 6svm:B, 6svo:A, 6svo:B, 6svp:A, 6svp:B, 6svq:A, 6svq:B, 2v4m:A, 2v4m:B, 2v4m:C, 2v4m:D, 2zj3:A, 2zj4:A, 6zmj:A, 6zmj:B, 6zmk:A, 6zmk:B
11 1e8c:B 497 60 0.0700 0.0423 0.3500 6.1 7b60:A, 7b60:B, 7b61:A, 7b61:B, 7b68:A, 7b68:B, 7b6g:BBB, 7b6i:B, 7b6j:A, 7b6j:B, 7b6k:A, 7b6k:B, 7b6l:A, 7b6l:B, 7b6m:B, 7b6n:B, 7b6p:A, 7b6p:B, 7b6q:B, 7b9e:A, 7b9e:B, 7b9w:BBB, 1e8c:A
12 4ivn:A 264 76 0.0767 0.0871 0.3026 7.3 4ivn:B
13 4lzj:B 299 148 0.1033 0.1037 0.2095 9.4 4lzj:C, 4lzj:D, 4lzj:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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