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BioLiP
>protein
SQKKRSKGSAQDWHRADIVAALHKRGITLAGLSRAHGLAARTLSNAMERHYPRAERLIAQALDMRPEDIWPQRYRN

The query sequence (length=76) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7f9h:A 76 76 1.0000 1.0000 1.0000 1.35e-51 7f9h:B
2 6za0:A 240 58 0.2632 0.0833 0.3448 1.2 6z74:A, 6z74:B, 6z74:C, 6z74:D, 6za0:B, 6za3:A, 6za3:B, 6za7:A, 6za7:B, 6za7:C, 6za7:D, 6zab:A
3 6z2w:E 2325 46 0.2237 0.0073 0.3696 1.2 6z2w:F, 6z2x:E, 6z2x:F, 6z3a:F, 6z3a:E
4 3kfu:F 447 37 0.1842 0.0313 0.3784 3.3 3kfu:I
5 8tua:A 1329 62 0.2500 0.0143 0.3065 3.4 5d3x:A, 5d3x:B, 5d3y:A, 5d3y:B, 5fi0:A, 5fi0:C, 5fi0:E, 5fi0:G
6 8k9e:C 449 27 0.1579 0.0267 0.4444 5.0 8k9f:C, 8x2j:C
7 8owr:B 229 51 0.1974 0.0655 0.2941 6.1 6th2:B, 6th2:D
8 5eqx:A 439 41 0.1842 0.0319 0.3415 7.0
9 3h70:A 342 31 0.1842 0.0409 0.4516 9.2

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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