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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
SQIYQVSTMTSLLDGVYDGDFELSEIPKYGDFGIGTFNKLDGELIGFDGEFYRLRSDGTATPVQNGDRSPFCSFTFFTPD
MTHKIDAKMTREDFEKEINSMLPSRNLFYAIRIDGLFKKVQTRTVELQEKPYVPMVEAVKTQPIFNFDNVRGTIVGFLTP
AYANGIAVSGYHLHFIDEGRNSGGHVFDYVLEDCTVTISQKMNMNLRLPNTADFFNANLDNPDFAKDIETTEGS

The query sequence (length=234) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 5xne:A 235 234 1.0000 0.9957 1.0000 2.03e-176 6j3d:A, 6j3d:B, 5xne:B
2 5yho:A 238 232 0.4060 0.3992 0.4095 2.24e-65 6inb:A, 6inc:A, 6j92:A, 6j92:B, 5yho:B
3 4bt2:A 237 217 0.3376 0.3333 0.3641 3.80e-50 4bt3:A, 4bt4:A, 4bt5:A, 4bt6:A, 4bt7:A
4 1xv2:C 233 231 0.3077 0.3090 0.3117 2.41e-41 1xv2:A, 1xv2:B, 1xv2:D
5 4v8l:D 2822 138 0.1496 0.0124 0.2536 0.15 4ce4:o, 6hiv:US, 6hiv:UT, 6hiw:US, 6hiw:UT, 6hiy:US, 6hiy:UT, 4v8l:E, 4v8l:F, 4v8l:A, 4v8l:B, 4v8l:C, 4v8v:A, 4v8v:B, 4v8v:C, 4v8v:D, 4v8v:E, 4v8v:F, 4v8w:D, 4v8w:E, 4v8w:F, 4v8w:A, 4v8w:B, 4v8w:C
6 6ryr:W 708 83 0.0940 0.0311 0.2651 0.61 2l75:A, 1mm2:A, 6q3m:D, 6ryu:W, 6ryu:V
7 6f34:A 458 34 0.0684 0.0349 0.4706 1.1 5oqt:A
8 7vka:A 595 53 0.0598 0.0235 0.2642 1.5 5kod:A, 5kod:B, 5kod:C, 7vka:B
9 4n54:A 340 48 0.0641 0.0441 0.3125 1.9 4n54:B, 4n54:C, 4n54:D
10 1wjp:A 107 27 0.0342 0.0748 0.2963 2.9
11 4eqm:A 269 55 0.0684 0.0595 0.2909 3.8 4eqm:B, 4eqm:C, 4eqm:D, 4eqm:E, 4eqm:F
12 5vml:A 245 95 0.1154 0.1102 0.2842 4.5
13 4xt0:A 243 55 0.0769 0.0741 0.3273 6.6
14 4jvh:A 176 81 0.1154 0.1534 0.3333 8.9
15 4h6d:B 329 54 0.0726 0.0517 0.3148 9.5 4h67:B, 4h6d:A, 4h6d:E, 4h6d:H

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218