Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
SQIPRLSAINDLHKIWPTVEEHGAAIIESFLSLDIVRRLNEEVDPFVKIEPIPAAKTKDHPNHVLSTTTRLVNVLAPISK
AYREDVLNSKVLHRICSDAFHVYGDYWVLMGAVMELAPSNPAQPLHRDMRFSHPIVEYLKPDAPATSINFLVALSPFTAE
NGATHVILGSHKWQNLSNVSMDATVRALMNPGDALLITDSTIHCGGAETTGTETRRLLTITMGISQLTPLESNLAVPRPV
IESLTPLAQRLLGWASQRSAAPRDIGLLTIRGNSIEKTMNLKAEQPL

The query sequence (length=287) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 5dap:A 288 287 1.0000 0.9965 1.0000 0.0 5daq:A, 5dav:A, 5daw:A, 5dax:A, 6eoz:A, 6jzm:B, 6k0e:B, 6k0f:B, 6k30:B, 6kd9:B, 6kd9:F, 5oa4:A, 5oa7:A, 5oa8:A, 7olk:A, 7oll:A, 7olm:A, 7olo:A, 7olp:A, 7olq:A, 7olr:A, 7olt:A, 5y7r:B, 5y7t:B
2 7etl:A 294 285 0.3519 0.3435 0.3544 4.36e-56 7de0:B, 7de0:A, 7de0:C, 7de0:D, 7etk:A, 7etk:B, 7etl:B, 6oxh:A, 6oxh:B, 6oxj:A, 6oxj:B, 7wsb:A, 7wsb:B, 7wsb:C, 7wsb:D, 7wsb:E, 7wsb:F, 4y5s:A, 4y5s:B, 4y5t:A, 4y5t:B
3 5m0t:A 287 287 0.3624 0.3624 0.3624 1.29e-54 5m0t:B
4 7vbq:A 276 256 0.3206 0.3333 0.3594 9.57e-47
5 7eyr:C 279 255 0.3206 0.3297 0.3608 2.26e-46 7eyr:A, 7eyr:B, 7eyr:D, 7eys:C, 7eyt:C, 7eyt:A, 7eyt:B, 7eyt:D, 7eyu:B, 7eyu:A, 7eyw:C, 7eyw:A, 7eyw:B, 7eyw:D, 7fcb:C
6 4nao:A 282 283 0.3240 0.3298 0.3286 5.13e-40
7 5ybn:A 296 267 0.2857 0.2770 0.3071 2.78e-37 5ybn:B, 5ybo:A, 5ybo:B, 5ybp:A, 5ybp:B, 5ybq:A, 5ybq:B, 5ybr:A, 5ybr:B, 5ybs:A, 5ybs:B, 5ybt:A, 5ybt:B
8 7vbq:B 271 278 0.2892 0.3063 0.2986 3.83e-37
9 5zm3:B 286 287 0.2927 0.2937 0.2927 3.06e-35 7wpy:A, 7wpy:B, 7wpy:C, 7wpy:D, 5zm3:A, 5zm3:C, 5zm3:D, 5zm4:A, 5zm4:B, 5zm4:C, 5zm4:D
10 5ybl:B 273 247 0.2613 0.2747 0.3036 1.40e-32 5ybl:A, 5ybl:C, 5ybl:D
11 4n5f:A 378 33 0.0383 0.0291 0.3333 1.1 4n5f:B
12 3ryb:A 563 96 0.1045 0.0533 0.3125 1.7 3drf:A, 3drg:A, 3drh:A, 3dri:A, 3drj:A, 3drk:A, 3rya:A
13 5uiv:A 225 76 0.0662 0.0844 0.2500 1.7
14 4xac:A 245 121 0.0976 0.1143 0.2314 1.8
15 2a1x:A 253 208 0.1568 0.1779 0.2163 2.2
16 3zuk:A 657 91 0.0976 0.0426 0.3077 4.2 3zuk:B
17 8fni:14 315 76 0.0697 0.0635 0.2632 4.5 8fnc:14, 8fnf:14, 8fnk:14
18 2oek:A 412 43 0.0488 0.0340 0.3256 4.9 2oej:B, 2oek:B, 2oel:A, 2oel:B, 2oem:A, 2oem:B
19 4m9a:B 376 33 0.0348 0.0266 0.3030 8.8 4m9a:A

[Back]
Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218