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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
SQIGLFSKICRVTIKTLHYYNKIGLLVPAYINPDNGYRFYTSDQLMKFHQIASLRQLGFTITEIVTLTQDENSCHIIERR
RLEIQKQIRDMADMLSRINHYLQHKKKERIMLYQAALKEIPECIVYSKRFIVPDFSSYIKLIPPIGQEVMKANPGLTLTT
PAYCFTLYHDKEYKEKNMDVEFCEAVNDFGKNEGNIIFQVIPAITAVTVIHKGPYDSLRNAYIYLMQWVEDNGYLLTNSP
RESYIDGIWNKQDSAEWMTEIQFPVEKV

The query sequence (length=268) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6xl5:G 268 268 1.0000 1.0000 1.0000 0.0 6wl5:A, 6wl5:B, 6wl5:C, 6wl5:D, 6xl5:H, 6xl6:G, 6xl6:H, 6xl9:G, 6xl9:H, 6xla:G, 6xla:H, 6xlj:G, 6xlj:H, 6xlk:G, 6xlk:H
2 3d6y:A 277 118 0.1679 0.1625 0.3814 8.58e-14 1bow:A, 7ckq:G, 7ckq:I, 3d6z:A, 3d70:A, 3d71:A, 1exi:A, 1exj:A, 3q1m:A, 3q2y:A, 3q3d:A, 3q5p:A, 3q5r:A, 3q5s:A, 1r8e:A
3 5xbt:A 271 233 0.2276 0.2251 0.2618 1.69e-12 5xbi:A, 5xbi:B, 5xbt:B, 5xql:A
4 2vz4:A 100 68 0.0970 0.2600 0.3824 1.21e-09
5 1r8d:A 109 63 0.0896 0.2202 0.3810 2.03e-08 1r8d:B
6 5kax:A 158 70 0.0821 0.1392 0.3143 2.45e-07 5kax:B
7 4wlw:A 130 104 0.1157 0.2385 0.2981 8.09e-06 7c17:G, 7c17:H, 6ldi:G, 6ldi:H, 1q05:A, 1q05:B, 4wls:A, 4wls:B, 6xh7:G, 6xh7:H, 6xh8:G, 6xh8:H
8 5crl:B 119 99 0.1082 0.2437 0.2929 1.88e-05
9 7zhd:A 149 121 0.1119 0.2013 0.2479 5.19e-05
10 4ua1:B 125 78 0.0896 0.1920 0.3077 1.53e-04 4ua1:A
11 6jni:A 145 66 0.0784 0.1448 0.3182 0.002 6jgw:B, 6jgw:A, 6jgx:A, 6jgx:B, 6jni:B, 6jni:H, 6jni:C, 6jni:D, 6jni:E, 6jni:F, 6jni:G, 6jyw:A, 6jyw:B
12 3gp4:A 132 101 0.0896 0.1818 0.2376 0.006 3gp4:B
13 4ovd:A 422 144 0.1269 0.0806 0.2361 0.15
14 1dek:A 241 73 0.0672 0.0747 0.2466 1.0 1dek:B, 1del:A, 1del:B
15 5vkt:A 353 70 0.0746 0.0567 0.2857 1.1 5vkt:B
16 2qb6:A 393 137 0.1045 0.0712 0.2044 1.5 2qb6:B, 2qb7:A, 2qb7:B, 2qb8:A, 2qb8:B
17 1mg5:A 255 59 0.0821 0.0863 0.3729 2.1 1mg5:B
18 5bp7:A 249 78 0.0858 0.0924 0.2949 3.2 5bp7:B, 5bp7:C
19 2a4x:A 131 29 0.0373 0.0763 0.3448 3.5 2a4w:A, 2a4w:B, 1kll:A
20 4r4e:B 84 66 0.0560 0.1786 0.2273 3.6
21 4r24:B 85 64 0.0672 0.2118 0.2812 3.7 4r22:B
22 3tcm:A 479 89 0.0858 0.0480 0.2584 4.2 3tcm:B
23 8r3g:A 335 47 0.0634 0.0507 0.3617 4.2 3bxf:A, 3bxg:A, 3bxg:B, 3bxh:A, 3bxh:B, 2okg:B, 7oyk:BBB, 7oyk:AAA, 7oyk:CCC, 7oyk:DDD, 8r3g:B, 8r3g:D, 8r3g:C
24 6sh6:A 681 42 0.0522 0.0206 0.3333 4.8 8ejm:A, 8ro2:DX, 5xdr:A
25 1b14:A 254 59 0.0746 0.0787 0.3390 6.1 1b14:B, 1b15:A, 1b15:B, 1b16:A, 1b16:B, 1b2l:A, 3rj5:A, 3rj9:A, 3rj9:B, 3rj9:C, 3rj9:D, 3rj9:E, 3rj9:F, 1sby:A, 1sby:B
26 5ysc:A 255 22 0.0485 0.0510 0.5909 9.8

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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