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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
SQGLLGYYFSDLNFQAPMVVTSSTTGDLSIPSSELENIPSENQYFQSAIWSGFIKVKKSDEYTFATSADNHVTMWVDDQE
VINNKIRLEKGRLYQIKIQYQRENPTEKGLDFKLYWTDSQNKKEVISSDNLQLPELKQKSSNSRKKRSTSAGPTVPDRDN
DGIPDSLEVEGYTVDVTFLSPYISNIHLTKYKSSPEKWSTASDPYSDFEKVTGRIDKNVSPEARHPLVAAYPIVHVDMEN
IILSKNEDQSTQNTDSQTRTISKNTSTSRTHTSNSNSSTVAIDHSLSLAGERTWAETMGLNTADTARLNANIRYVNTGTA
PIYNVLPTTSLVLGKNQTLATIKAKENQLSQILAPNNYYPSKNLAPIALNAQDDFSSTPITMNYNQFLELEKTKQLRLDT
DQVYGNIATYNFENGRVRVDTGSNWSEVLPQIQETTARIIFNGKDLNLVERRIAAVNPSDPLETTKPDMTLKEALKIAFG
FNEPNGNLQYQGKDITEFDFNFDQQTSQNIKNQLAELNATNIYTVLDKIKLNAKMNILIRDKRFHYDRNNIAVGADESVV
KEAHREVINSSTEGLLLNIDKDIRKILSGYIVEIEDTEGLKEVINDRYDMLNISSLRQDGKTFIDFKKYNDKLPLYISNP
NYKVNVYAVTKENTIINPSENGDTSTNGIKKILIFSKKGYEI

The query sequence (length=682) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 4h2a:A 704 699 0.9985 0.9673 0.9742 0.0 4ee2:A, 5fr3:A, 3hvd:B, 3kwv:A, 3kwv:B, 3kwv:D, 3kwv:E, 3mhz:A, 4nam:A, 3q8a:A, 3q8e:A, 3tew:A, 3tex:A, 3tey:A, 3tez:A, 1tzn:A, 1tzn:B, 1tzn:C, 1tzn:D, 1tzn:E, 1tzn:F, 1tzn:G, 1tzn:H, 1tzn:I, 1tzn:J, 1tzn:K, 1tzn:L, 1tzn:M, 1tzn:O, 1tzo:A, 1tzo:B, 1tzo:C, 1tzo:D, 1tzo:E, 1tzo:F, 1tzo:G, 1tzo:H, 1tzo:I, 1tzo:J, 1tzo:K, 1tzo:L, 1tzo:M, 1tzo:O, 6vra:A, 6vra:B, 6vra:C, 6vra:D, 6vra:E, 6vra:F, 6vra:G, 6vra:H, 6wjj:A, 6wjj:B, 6wjj:C, 6wjj:F, 6wjj:D, 6wjj:G, 6wjj:E, 6wjj:H
2 1t6b:X 676 703 0.9575 0.9660 0.9289 0.0 1acc:A, 3hvd:A, 3hvd:C, 3hvd:D, 3hvd:E, 3hvd:F, 3hvd:G, 3hvd:H, 3q8b:A, 3q8c:A
3 3q8f:A 645 688 0.9355 0.9891 0.9273 0.0
4 7kxr:A 562 561 0.7742 0.9395 0.9412 0.0 3j9c:A, 7kxr:B, 7kxr:C, 7kxr:D, 7kxr:E, 7kxr:F, 7kxr:G, 6psn:A, 6psn:B, 6psn:C, 6psn:D, 6psn:E, 6psn:F, 6psn:G, 6uzb:A, 6uzb:B, 6uzb:C, 6uzb:D, 6uzb:E, 6uzb:F, 6uzb:G, 6uzd:A, 6uzd:B, 6uzd:C, 6uzd:D, 6uzd:E, 6uzd:F, 6uzd:G, 6uze:A, 6uze:B, 6uze:C, 6uze:D, 6uze:E, 6uze:F, 6uze:G
5 7o85:A 332 417 0.4296 0.8825 0.7026 0.0 7o85:D, 7o85:G, 7o85:J, 7o85:M, 7o85:P, 7o85:S
6 8dcm:C 695 588 0.3065 0.3007 0.3554 6.71e-88
7 7vnn:D 641 389 0.2375 0.2527 0.4165 8.52e-77 8ekm:A, 8ekm:B, 8ekm:C, 8ekm:D, 8ekm:E, 8ekm:F, 8ekm:G, 7vnj:A, 7vnj:B, 7vnj:C, 7vnj:D, 7vnj:E, 7vnj:F, 7vnj:G, 7vnn:A, 7vnn:B, 7vnn:C, 7vnn:E, 7vnn:F, 7vnn:G, 7yvq:A, 7yvq:B, 7yvq:C, 7yvq:D, 7yvq:E, 7yvq:F, 7yvq:G, 7yvs:A, 7yvs:B, 7yvs:C, 7yvs:D, 7yvs:E, 7yvs:F, 7yvs:G
8 6klw:A 406 408 0.2361 0.3966 0.3946 1.45e-75 6klw:B, 6klw:C, 6klw:D, 6klw:E, 6klw:F, 6klw:G
9 6klo:A 368 389 0.2302 0.4266 0.4036 3.45e-75 6klo:B, 6klo:C, 6klo:D, 6klo:E, 6klo:F, 6klo:G, 6klx:A, 6klx:B, 6klx:C, 6klx:D, 6klx:E, 6klx:F, 6klx:G
10 6uwr:A 660 411 0.2405 0.2485 0.3990 2.70e-74 6uwi:A, 6uwi:h, 6uwi:G, 6uwi:n, 6uwi:F, 6uwi:m, 6uwi:E, 6uwi:l, 6uwi:D, 6uwi:k, 6uwi:C, 6uwi:j, 6uwi:B, 6uwi:i, 6uwi:H, 6uwi:a, 6uwi:I, 6uwi:b, 6uwi:J, 6uwi:c, 6uwi:K, 6uwi:d, 6uwi:L, 6uwi:e, 6uwi:M, 6uwi:f, 6uwi:N, 6uwi:g, 6uwr:B, 6uwr:C, 6uwr:D, 6uwr:E, 6uwr:F, 6uwr:G, 6uwr:H, 6uwr:I, 6uwr:J, 6uwr:K, 6uwr:L, 6uwr:M, 6uwr:N, 6uwt:H, 6uwt:I, 6uwt:J, 6uwt:K, 6uwt:L, 6uwt:M, 6uwt:N, 6uwt:A, 6uwt:B, 6uwt:C, 6uwt:D, 6uwt:E, 6uwt:F, 6uwt:G
11 8ekk:A 533 389 0.2331 0.2983 0.4087 4.96e-74 8ekk:B, 8ekk:C, 8ekk:D, 8ekk:E, 8ekk:F, 8ekk:G, 8ekl:A, 8ekl:B, 8ekl:C, 8ekl:D, 8ekl:E, 8ekl:F, 8ekl:G
12 6sms:A 724 595 0.2962 0.2790 0.3395 2.31e-73
13 7mjr:A 899 594 0.2771 0.2102 0.3182 1.58e-66
14 6v1s:E 276 327 0.1891 0.4674 0.3945 6.47e-61 6v1s:A, 6v1s:B, 6v1s:C, 6v1s:D, 6v1s:F, 6v1s:G
15 6qdi:A 294 155 0.0718 0.1667 0.3161 3.24e-09
16 6qdi:A 294 81 0.0337 0.0782 0.2840 0.029
17 6qe7:A 291 97 0.0513 0.1203 0.3608 1.12e-07 6qe7:B, 6qe7:C
18 6qe7:A 291 140 0.0557 0.1306 0.2714 5.30e-07 6qe7:B, 6qe7:C
19 6gvw:B 262 81 0.0337 0.0878 0.2840 1.4 5cw6:A, 6gvw:G, 6h3c:B, 6h3c:G, 6r8f:A, 6r8f:C
20 4pdd:A 303 48 0.0264 0.0594 0.3750 2.8 4pdd:B, 4pdd:C
21 2ogi:B 194 86 0.0352 0.1237 0.2791 3.7 2ogi:A
22 7knc:A 919 69 0.0235 0.0174 0.2319 4.0
23 8oxm:A 2748 52 0.0279 0.0069 0.3654 6.6 8oxm:B
24 7sic:A 2773 52 0.0279 0.0069 0.3654 6.7 8oxo:A, 8oxo:B, 8oxp:A, 8oxp:B, 7sic:B, 7sid:A, 7sid:C
25 6m63:A 359 107 0.0411 0.0780 0.2617 9.3 6m63:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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