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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
SQFTCFYNSRANISCVWSQDTSCQVHAWPDRRRWNQTCELLPVSQASWACNLILGAPDSQKLTTVDIVTLRVLCREGVRW
RVMAIQDFKPFENLRLMAPISLQVVHVETHRCNISWEISQASHYFERHLEFEARTLSPGHTWEEAPLLTLKQKQEWICLE
TLTPDTQYEFQVRVKPLQGEFTTWSPWSQPLAFRTKPAA

The query sequence (length=199) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 2erj:B 204 201 0.9849 0.9608 0.9751 2.01e-144 2erj:F, 5m5e:B, 7s2s:B, 7s2s:D
2 6dg5:B 206 201 0.6030 0.5825 0.5970 1.83e-83
3 4nzd:A 210 194 0.2211 0.2095 0.2268 1.46e-05 4nzd:B, 4nzd:C, 3tgx:A, 3tgx:C, 3tgx:E, 3tgx:G, 3tgx:I, 3tgx:K, 3tgx:O, 3tgx:M
4 2gys:B 406 131 0.1809 0.0887 0.2748 0.15
5 5yvl:D 206 27 0.0653 0.0631 0.4815 2.3 6al6:A, 6al6:B, 6al7:A, 6al7:B, 6al7:D, 6al7:E, 6al8:A, 6al8:B, 6al8:D, 6al8:E, 5wpp:A, 5wpp:B, 5wpr:A, 5wps:A, 5wpu:A, 5yvl:A, 5yvl:B, 5yvl:C, 5z54:A, 5z54:B, 5z54:C, 5z54:D
6 1eba:A 212 206 0.2362 0.2217 0.2282 3.1 1eba:B, 1ebp:A, 1ebp:B
7 1bp3:B 197 26 0.0603 0.0609 0.4615 5.3 3d48:R
8 6j03:A 200 29 0.0704 0.0700 0.4828 6.1 6a92:A, 6a92:B, 6a92:C, 6a92:D, 6adu:A, 6adu:B, 6adu:C, 6adu:D, 5yvk:A, 5yvp:A, 5yvp:B, 5yvp:C, 5yvp:D, 5z53:A, 5z53:B, 5z53:C, 5z53:D, 5zfj:A, 5zfj:B, 5zfj:C, 5zfj:D
9 3nvn:B 474 42 0.0804 0.0338 0.3810 7.8
10 1gve:A 324 64 0.1106 0.0679 0.3438 9.5
11 3wpn:A 309 40 0.0804 0.0518 0.4000 9.6

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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