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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
SQAWQPGVAMPNLYKMQRMLLEKCDLQNYGDSATLPKGIMMNVAKYTQLCQYLNTLTLAVPYNMRVIHFGAGSDKGVAPG
TAVLRQWLPTGTLLVDSDLNDFVSDADSTLIGDCATVHTANKWDLIISDMYDPKTKNVTKENDSKEGFFTYICGFIQQKL
ALGGSVAIKITEHSWNADLYKLMGHFAWWTAFVTNVNASSSEAFLIGCNYLGKPREQIDGYVMHANYIFWRNTNPIQLSS
YSLFDMSKFPLKLRGTAVMSLKEGQINDMILSLLSKGRLIIRENNRVVISSDVLVN

The query sequence (length=296) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8bsd:A 301 296 1.0000 0.9834 1.0000 0.0 8a23:A, 7bq7:A, 8bzv:A, 8c0g:A, 7c2i:A, 7c2j:A, 8c5m:A, 9emj:A, 9eml:A, 9emv:A, 9eun:A, 8f4s:A, 8f4y:A, 9gny:A, 9grp:A, 9grq:A, 7jhe:A, 7jib:A, 7jpe:A, 7jyy:A, 7jyy:C, 7jz0:A, 7jz0:C, 7koa:A, 7l6r:A, 7l6t:A, 7lw3:A, 7lw4:A, 8osx:A, 8ot0:A, 8oto:A, 8otr:A, 8ov1:A, 8ov2:A, 8ov3:A, 8ov4:A, 7r1t:A, 7r1u:A, 3r24:A, 8rv4:A, 8rv5:A, 8rv6:A, 8rv7:A, 8rv8:A, 8rv9:A, 8rva:A, 8rvb:A, 8rzc:A, 8rzd:A, 8rze:A, 8s8w:A, 8s8x:A, 8tyj:A, 6w4h:A, 6w61:A, 6w75:A, 6w75:C, 6wjt:A, 6wjt:C, 6wkq:A, 6wkq:C, 6wks:AAA, 6wq3:A, 6wrz:A, 6wvn:A, 6xkm:A, 2xyq:A, 2xyr:A, 2xyv:A, 6yz1:A
2 5ynn:A 295 294 0.6588 0.6610 0.6633 1.24e-152 5yn6:A, 5yn8:A, 5ynb:A, 5ynf:A, 5yni:A, 5ynj:A, 5ynm:A, 5yno:A, 5ynp:A, 5ynq:A
3 7nh7:A 295 291 0.6588 0.6610 0.6701 6.27e-143
4 8aaf:D 185 28 0.0541 0.0865 0.5714 1.4 8agt:D, 8agu:D, 8agv:D, 8agw:D, 8agx:D, 8agz:D, 5apn:Q, 5apo:Q, 7azy:m, 7b7d:Lm, 8bip:LQ, 8bjq:LQ, 8bn3:M8, 8bqd:BB, 8bqx:BB, 7bt6:Q, 7btb:Q, 6c0f:Q, 6cb1:Q, 8ccs:C, 8cdl:C, 8cdr:C, 8ceh:C, 8cf5:C, 8cg8:C, 8cgn:C, 8civ:C, 8cku:C, 8cmj:C, 5dat:M8, 5dat:m8, 5dc3:M8, 5dc3:m8, 5dge:M8, 5dge:m8, 5dgf:M8, 5dgf:m8, 5dgv:M8, 5dgv:m8, 8e5t:Q, 6elz:Q, 6em1:Q, 6em3:Q, 6em4:Q, 6em5:Q, 8eub:AQ, 8evp:AQ, 8evq:AQ, 8evr:AQ, 8evs:AQ, 8evt:AQ, 8ewb:AQ, 8ewc:AQ, 5fci:M8, 5fci:m8, 5fcj:M8, 5fcj:m8, 6ft6:Q, 5gak:S, 6gq1:Q, 6gqb:Q, 6gqv:Q, 5h4p:Q, 6hd7:S, 8hfr:Qk, 6hhq:y, 6hhq:CS, 5i4l:M8, 5i4l:m8, 6i7o:BB, 6i7o:YB, 5it7:QQ, 3j6x:58, 3j6y:58, 3j77:68, 3j78:68, 3jct:Q, 5jcs:Q, 5juo:V, 5jup:V, 5jus:V, 5jut:V, 5juu:V, 8k2d:LQ, 8k82:LQ, 5lyb:M8, 5lyb:m8, 5m1j:Q5, 6m62:Q, 5mc6:BB, 5mei:y, 5mei:CS, 7mpi:AQ, 7mpj:AQ, 6n8j:Q, 6n8k:Q, 6n8l:Q, 6n8m:d, 6n8n:d, 6n8o:d, 7n8b:AQ, 7nac:Q, 5ndg:M8, 5ndg:m8, 5ndv:M8, 5ndv:m8, 5ndw:M8, 5ndw:m8, 7nrc:LS, 7nrd:LS, 5obm:M8, 5obm:m8, 7of1:Q, 7oh3:Q, 7ohp:Q, 7ohq:Q, 7ohr:Q, 7ohs:Q, 7ohu:Q, 7ohv:Q, 7ohw:Q, 7ohx:Q, 7ohy:Q, 6oig:Q, 5on6:y, 5on6:CS, 7osa:eL18, 7osm:eL18, 8p8m:QP, 8p8n:QP, 8p8u:QP, 8pfr:QP, 6q8y:BB, 6qik:Q, 6qt0:Q, 6qtz:Q, 7r7a:Q, 6r84:S, 6r86:S, 6r87:S, 6ri5:Q, 7rr5:LQ, 6rzz:Q, 6s05:Q, 6s47:AS, 6snt:w, 6sv4:BB, 6sv4:YB, 6sv4:ZB, 6t4q:LQ, 5t62:d, 5t6r:d, 6t7i:LQ, 6t7t:LQ, 6t83:Qy, 6t83:B, 5tbw:y, 5tbw:CS, 6tb3:BB, 5tga:M8, 5tga:m8, 5tgm:M8, 5tgm:m8, 6tnu:BB, 7too:AL18, 7top:AL18, 7u0h:Q, 4u3m:M8, 4u3m:m8, 4u3n:M8, 4u3n:m8, 4u3u:M8, 4u3u:m8, 4u4n:M8, 4u4n:m8, 4u4o:M8, 4u4o:m8, 4u4q:M8, 4u4q:m8, 4u4r:M8, 4u4r:m8, 4u4u:M8, 4u4u:m8, 4u4y:M8, 4u4y:m8, 4u4z:M8, 4u4z:m8, 4u50:M8, 4u50:m8, 4u51:M8, 4u51:m8, 4u52:M8, 4u52:m8, 4u53:M8, 4u53:m8, 4u55:M8, 4u55:m8, 4u56:M8, 4u56:m8, 4u6f:M8, 4u6f:m8, 7ug6:Q, 7uoo:Q, 7uqb:Q, 7uqz:Q, 6uz7:AQ, 7v08:Q, 4v4b:BO, 4v6i:BR, 4v7f:Q, 4v7h:BO, 4v7r:BR, 4v7r:DR, 4v88:BQ, 4v88:DQ, 4v8t:Q, 4v8y:BQ, 4v8z:BQ, 8v83:Q, 8v84:Q, 8v87:Q, 4v91:Q, 6woo:Q, 6xiq:Q, 6xir:Q, 8y0u:LQ, 6ylg:Q, 6ylh:Q, 6ylx:Q, 6yly:Q, 5z3g:U, 7z34:Q, 6z6j:LQ, 6z6k:LQ, 7zpq:BP, 7zrs:BP, 7zs5:BR, 7zuw:BP, 7zux:EP, 7zw0:LT
5 3ahc:A 802 67 0.0574 0.0212 0.2537 2.6 3ahd:A, 3ahe:A, 3ahf:A, 3ahg:A, 3ahh:A, 3ahi:A, 3ahj:A
6 2plw:A 182 93 0.0845 0.1374 0.2688 2.7
7 7kmq:B 754 27 0.0372 0.0146 0.4074 5.0 7kmq:A
8 7xif:D 288 33 0.0338 0.0347 0.3030 7.0 7xif:A, 7xif:B, 7xif:C, 7xif:E, 7xif:F, 7xif:G, 7xif:H, 7xif:I, 7xif:J, 7xif:K, 7xif:L, 7xig:A, 7xig:B, 7xig:C, 7xig:D, 7xig:E, 7xig:F, 7xig:G, 7xig:H, 7xih:A, 7xih:B, 7xii:A, 7xii:B, 7xii:C, 7xii:D
9 6ysw:A 707 31 0.0338 0.0141 0.3226 7.6
10 2qpx:A 376 63 0.0541 0.0426 0.2540 7.9

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218