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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
SQAVVVAIDAKRVDGEFMVFTYSGKKNTGILLRDWVVEVEKRGAGEILLTSIDRDGTKSGYDTEMIRFVRPLTTLPIIAS
GGAGKMEHFLEAFLRGADKVSINTAAVENPSLITQIAQTF

The query sequence (length=120) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 3tdm:A 120 119 0.9917 0.9917 1.0000 1.09e-84 3tdm:B, 3tdm:C, 3tdm:D
2 7qc8:A 250 98 0.8083 0.3880 0.9898 5.61e-66 4ewn:D, 2wjz:E, 3zr4:E
3 7qc8:A 250 57 0.2833 0.1360 0.5965 1.45e-13 4ewn:D, 2wjz:E, 3zr4:E
4 3iiv:B 262 98 0.7333 0.3359 0.8980 1.75e-56 7ac8:A, 7ac8:C, 7ac8:E, 6ct3:A, 5d2t:A, 5d2w:A, 6dc1:A, 6dc1:B, 6dc1:H, 6dc1:K, 6dkv:A, 6dnj:A, 1gpw:C, 1gpw:E, 6rtz:A, 6ru0:A, 6ru0:C, 6ru0:E, 2wjz:A, 2wjz:C
5 3iiv:B 262 57 0.2833 0.1298 0.5965 2.09e-13 7ac8:A, 7ac8:C, 7ac8:E, 6ct3:A, 5d2t:A, 5d2w:A, 6dc1:A, 6dc1:B, 6dc1:H, 6dc1:K, 6dkv:A, 6dnj:A, 1gpw:C, 1gpw:E, 6rtz:A, 6ru0:A, 6ru0:C, 6ru0:E, 2wjz:A, 2wjz:C
6 1h5y:B 253 91 0.4250 0.2016 0.5604 3.18e-26 1h5y:A
7 1h5y:B 253 84 0.2417 0.1146 0.3452 8.41e-09 1h5y:A
8 1ox4:B 538 119 0.3667 0.0818 0.3697 7.27e-17 1jvn:B, 1ox4:A, 1ox5:A, 1ox5:B, 1ox6:B
9 2y88:A 244 86 0.2083 0.1025 0.2907 1.38e-04 2y85:A, 2y85:B, 2y85:C, 2y85:D, 3zs4:A
10 2y88:A 244 77 0.1750 0.0861 0.2727 0.72 2y85:A, 2y85:B, 2y85:C, 2y85:D, 3zs4:A
11 9fcf:A 265 105 0.1917 0.0868 0.2190 3.00e-04 9fcg:A
12 4tx9:A 246 51 0.1417 0.0691 0.3333 4.88e-04
13 4tx9:A 246 74 0.1667 0.0813 0.2703 1.9
14 5dn1:A 240 51 0.1333 0.0667 0.3137 0.002
15 1ep3:A 311 42 0.1167 0.0450 0.3333 0.088 1ep1:A, 1ep2:A, 5ksw:A, 5ksw:C, 5ue9:A, 5ue9:C
16 4jej:A 241 50 0.1500 0.0747 0.3600 0.31
17 4n6f:A 242 38 0.1250 0.0620 0.3947 0.50 4n6f:B
18 2z6i:B 321 67 0.1583 0.0592 0.2836 0.64 2z6i:A, 2z6j:A, 2z6j:B
19 8gmm:A 232 38 0.1083 0.0560 0.3421 0.75 8gmm:B
20 5ikj:A 448 48 0.1333 0.0357 0.3333 0.77
21 6m73:A 364 70 0.1833 0.0604 0.3143 1.2 6m74:A
22 1xiu:B 224 57 0.1667 0.0893 0.3509 1.6 1xiu:A
23 4v7f:l 380 35 0.1167 0.0368 0.4000 4.4 5jcs:u, 4v8t:t
24 4q4k:A 351 82 0.1750 0.0598 0.2561 6.0 4q4k:B, 4qis:A, 4qis:B, 4qit:A, 4qit:B, 4qiu:A, 4qiu:B
25 5ys9:A 692 33 0.1000 0.0173 0.3636 6.6 5ys9:B
26 5hb3:C 709 63 0.1583 0.0268 0.3016 6.6 5hb3:A, 7tbi:D1, 7tbi:D2, 7tbi:D3, 7tbi:D4
27 4z38:B 439 48 0.1583 0.0433 0.3958 6.7 4z38:A
28 2bht:A 294 61 0.1417 0.0578 0.2787 8.3 2bhs:A, 2bhs:B, 2bhs:C, 2bhs:D, 2bht:B, 2bht:C, 2bht:D, 2jc3:A, 2jc3:H, 2jc3:B, 2jc3:C, 2jc3:D, 2jc3:E, 2jc3:F, 2jc3:G, 2v03:A
29 4pnf:B 221 29 0.0833 0.0452 0.3448 8.5 4pnf:A, 4pnf:C, 4pnf:D, 4pnf:E, 4pnf:F, 4pnf:G, 4pnf:H, 4yh2:A, 4yh2:B, 4yh2:C, 4yh2:D
30 4xp7:A 324 85 0.1833 0.0679 0.2588 9.4 6eza:A, 6eza:B, 6ezb:A, 6ezc:A, 4wfs:A
31 7r4p:A 337 18 0.0833 0.0297 0.5556 9.7 7m2o:A, 2rdt:A, 2w0u:A, 2w0u:B, 2w0u:C, 2w0u:D, 6w44:A, 6w45:A, 6w4c:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218