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BioLiP
>protein
SQARNQLANKPSKTKVKKEQSLARLYGAKDLNIPTLNRAIVPGVKIRRGKKGKKFIADNDTLTLNRLITTIGDKYDDIAE
SKLEKARRLEEIRELKRKEIERKE

The query sequence (length=104) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 8v87:7 134 120 1.0000 0.7761 0.8667 9.10e-64 7nac:7, 7r7a:7, 7r7c:7
2 7r6k:7 109 104 0.8365 0.7982 0.8365 3.84e-42
3 8i9t:CX 88 80 0.3077 0.3636 0.4000 6.87e-07 8i9v:CX, 8i9w:CX, 8i9x:CX, 8i9y:CX, 8i9z:CX, 8ia0:CX
4 5it7:OO 198 52 0.1827 0.0960 0.3654 0.086 6uz7:AO
5 8c3a:w 199 54 0.1635 0.0854 0.3148 0.74 8c3a:BJ, 8cq7:w, 8cq7:BJ, 8cqw:w, 8cqw:BJ, 8cre:w, 8cre:BJ, 8oeq:w, 8oeq:BJ, 7pzy:w, 7q08:w, 7q0f:w, 7q0p:w, 7q0r:w, 8q5i:w
6 5xy3:O 196 41 0.1442 0.0765 0.3659 0.79
7 7zjm:A 220 27 0.1058 0.0500 0.4074 0.81 6atg:B, 6atg:C
8 6ote:A 409 43 0.1250 0.0318 0.3023 2.8
9 1jx0:A 217 31 0.1346 0.0645 0.4516 3.3 1eyq:A, 1eyq:B, 1fm7:A, 1fm7:B, 1fm8:A, 1jep:A, 1jep:B, 1jx1:C
10 4ydp:A 83 46 0.1538 0.1928 0.3478 5.6 4ydp:B
11 6eu0:V 273 55 0.1731 0.0659 0.3273 6.0 7q5b:X
12 4dok:A 208 50 0.1346 0.0673 0.2800 8.4

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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