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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
SQAIKANNLVFLSGVLGLIPETGKFVSESVEDQTEQVLKNMGEILKASGADYSSVVKTTIMLADLADFKTVNEIYAKYFP
APSPARSTYQVAALPLNAKIEIECIATL

The query sequence (length=108) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 5hp8:A 108 108 1.0000 1.0000 1.0000 1.10e-75 5hp8:B, 5hp8:C
2 2b33:B 126 106 0.4444 0.3810 0.4528 9.90e-28
3 7cd4:A 124 106 0.4167 0.3629 0.4245 1.10e-25 7cd4:C
4 8yrc:A 125 108 0.4259 0.3680 0.4259 1.43e-25
5 3k0t:C 124 105 0.4352 0.3790 0.4476 2.54e-25 3k0t:A, 3k0t:B
6 5v4d:A 127 107 0.4444 0.3780 0.4486 4.01e-24 5v4d:B, 5v4d:E
7 2uyk:C 127 108 0.3889 0.3307 0.3889 6.29e-21 2uyn:A, 2uyn:B, 2uyn:C
8 3vcz:B 127 109 0.4074 0.3465 0.4037 2.11e-19
9 3lyb:B 137 129 0.2685 0.2117 0.2248 2.75e-04
10 1dwa:M 499 65 0.1667 0.0361 0.2769 1.1 1dwf:M, 1dwg:M, 1dwh:M, 1dwi:M, 1dwj:M, 1e4m:M, 1e6q:M, 1e6s:M, 1e6x:M, 1e70:M, 1e71:M, 1e72:M, 1e73:M, 1myr:A, 1w9b:M, 1w9d:M, 2wxd:M
11 2p6r:A 683 47 0.1667 0.0264 0.3830 2.0
12 4cj1:A 544 74 0.1944 0.0386 0.2838 3.0 4cj0:A, 1clc:A
13 6et7:A 646 55 0.1667 0.0279 0.3273 3.9 6et7:B
14 5llw:B 673 55 0.1667 0.0267 0.3273 3.9 5llw:A, 5llx:A, 5llx:B, 5lly:D, 5lly:A, 5lly:C, 5lly:B, 6saw:A, 6saw:B, 6saw:C, 6saw:D, 6saw:E, 6saw:F, 6saw:G, 6saw:H, 6sax:B, 6sax:A
15 5bnt:C 371 44 0.1481 0.0431 0.3636 5.2 5bnt:B, 5bnt:A, 5bnt:D
16 6jmu:A 127 91 0.2778 0.2362 0.3297 6.5 6iui:B, 6iui:A, 6jmu:B
17 1dot:A 686 27 0.1111 0.0175 0.4444 8.3 1gv8:A, 1gvc:A, 1ovb:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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