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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
SQAEFDKAAEEVKHLKTKPADEEMLFIYSHYKQATVGDINTERPGMLDFKGKAKWDAWNELKGTSKEDAMKAYIDKVEEL
KKKYGI

The query sequence (length=86) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 1aca:A 86 86 1.0000 1.0000 1.0000 2.60e-59 2cb8:A, 2cb8:B, 2fj9:A, 1nvl:A
2 3epy:A 88 85 0.6163 0.6023 0.6235 1.83e-32 3epy:B
3 3fp5:A 106 87 0.5349 0.4340 0.5287 1.17e-27
4 2wh5:A 90 86 0.4302 0.4111 0.4302 1.47e-19 2wh5:B, 2wh5:C, 2wh5:D, 2wh5:F, 2wh5:E
5 3flv:A 92 85 0.4302 0.4022 0.4353 1.37e-15 3flv:B
6 7fc7:A 96 89 0.4070 0.3646 0.3933 2.45e-14
7 1hbk:A 89 60 0.2442 0.2360 0.3500 1.53e-09
8 4y0k:A 405 42 0.1279 0.0272 0.2619 0.81 4y1b:A
9 4v4c:A 875 48 0.1628 0.0160 0.2917 2.9 4v4c:C, 4v4c:E, 4v4c:G, 4v4c:I, 4v4c:K, 4v4c:M, 4v4c:O, 4v4c:Q, 4v4c:S, 4v4c:U, 4v4c:W, 4v4d:A, 4v4d:C, 4v4d:E, 4v4d:G, 4v4d:I, 4v4d:K, 4v4d:M, 4v4d:O, 4v4d:Q, 4v4d:S, 4v4d:U, 4v4d:W, 4v4e:A, 4v4e:C, 4v4e:E, 4v4e:G, 4v4e:I, 4v4e:K, 4v4e:M, 4v4e:O, 4v4e:Q, 4v4e:S, 4v4e:U, 4v4e:W
10 8hs7:A 126 27 0.1163 0.0794 0.3704 4.9
11 8df9:A 781 26 0.1279 0.0141 0.4231 7.7
12 8df7:A 850 26 0.1279 0.0129 0.4231 8.2 8df7:B, 8df8:A, 8df8:B, 8df9:B, 8dfb:A, 8dfb:B, 4gfj:A, 3m6k:B, 3m6z:A, 3m6z:B
13 5awp:A 596 26 0.1279 0.0185 0.4231 8.3 5awq:A
14 7xpg:A 463 24 0.1279 0.0238 0.4583 8.4 7xpg:B, 7xpg:C

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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