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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
SPWFGMDIGGTLVKLSYFEPIDITAEEEQEEVESLKSIRKYLTSNVAYGSTGIRDVHLELKDLTLFGRRGNLHFIRFPTQ
DLPTFIQMGRDTVLCATGGGAYKFEKDFRTIGNLHLHKLDELDCLVKGLLYIDSVSFNGQAECYYFANASEPERCQKMPF
NLDDPYPLLVVNIGSGVSILAVHSKDNYKRVTGTSLGGGTFLGLCSLLTGCESFEEALEMASKGDSTQADKLVRDIYGGD
YERFGLPGWAVASSFGNMIYKEKRESVSKEDLARATLVTITNNIGSVARMCAVNEKINRVVFVGNFLRVNTLSMKLLAYA
LDYWSKGQLKALFLEHEGYFGAVGALLGLPNF

The query sequence (length=352) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 5kpr:A 359 356 1.0000 0.9805 0.9888 0.0 6b3v:A, 2i7p:A, 2i7p:C, 2i7p:B, 2i7p:D, 5kpt:A, 5kpz:A, 5kq8:A, 3mk6:A, 3mk6:C, 3mk6:B, 3mk6:D, 6pe6:A, 3sms:A, 7ue3:A, 7ue4:A, 7ue5:A, 7ue6:A, 7ue7:A, 7ue8:A, 7ueo:A, 7uep:A, 7ueq:A, 7uer:A, 7ues:A, 7uet:A, 7ueu:A, 7uev:A, 7uex:A, 7uey:A, 6x4j:A, 6x4k:A, 6x4l:A
2 5kqd:A 312 351 0.8864 1.0000 0.8889 0.0
3 5e26:B 362 355 0.8352 0.8122 0.8282 0.0 5e26:A, 5e26:C, 5e26:D
4 3smp:B 363 355 0.8040 0.7796 0.7972 0.0 2i7n:B, 3smp:A
5 2i7n:A 325 348 0.7557 0.8185 0.7644 0.0
6 7t1i:B 314 263 0.2983 0.3344 0.3992 1.49e-43 7t1g:B
7 7t1h:A 342 278 0.3097 0.3187 0.3921 6.46e-42 7t1g:A, 7t1h:B, 7t1i:A, 6uj5:A
8 4m7x:A 273 178 0.1449 0.1868 0.2865 1.37e-06 6avp:A, 6avp:C, 6avp:B, 6avp:D, 6awg:A, 6awg:B, 6awg:C, 6awg:D, 6awh:A, 6awh:B, 6awh:C, 6awh:D, 6awi:A, 6awi:B, 6awi:C, 6awi:D, 6awj:A, 6awj:B, 6awj:C, 6awj:D, 6ebv:A, 6ebv:B, 6ebv:C, 6ebv:D, 5elz:A, 2ews:A, 2ews:B, 5jic:A, 4m7y:A, 4m7y:B, 4nb4:A, 4nb4:B, 4nb4:C, 4nb4:D, 4nb4:E, 4nb4:F, 4nb4:G, 4nb4:H
9 3ewr:A 167 27 0.0398 0.0838 0.5185 3.3
10 6xmg:A 638 65 0.0483 0.0266 0.2615 6.0 6xmf:A
11 2ho4:B 252 28 0.0312 0.0437 0.3929 7.3 2ho4:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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