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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
SPSLIAKFEKTSKSNIEGTIKFTPANNGTVSVSVDLKGLPSDIGPFPYHVHEKPVPASKNCSATENHFNPAATPAAHEVG
NLAGKHGNIMGESYKTEYDDSYISLNEKSRSYIGGLSIVIHANNGTRLNCANITLLDEGHGNANTT

The query sequence (length=146) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 5kbk:A 157 152 0.9863 0.9172 0.9474 9.17e-102 5kbl:A, 5kbm:A, 4n3t:A, 4n3u:A
2 2e46:A 157 147 0.3151 0.2930 0.3129 9.42e-08 2e47:A, 2e47:B
3 7b4p:AAA 151 142 0.2671 0.2583 0.2746 9.61e-05 7b4o:AAA, 7b4o:BBB, 7b4o:CCC, 7b4o:DDD, 7b4p:BBB, 7b4p:CCC, 7b4p:DDD
4 4oja:A 149 142 0.2808 0.2752 0.2887 2.85e-04
5 3km1:A 125 125 0.2397 0.2800 0.2800 3.66e-04 3km1:B, 3mkg:A, 3mkg:B, 3s0p:A, 3s0p:B, 3s0p:C, 3s0p:D, 3s0p:E, 3s0p:F, 3s0p:G, 3s0p:H
6 8jd8:A 153 57 0.1507 0.1438 0.3860 5.76e-04 8jd8:C, 8jd8:B, 8jd8:D
7 1xso:A 150 144 0.2671 0.2600 0.2708 0.002 1xso:B
8 1srd:A 154 57 0.1370 0.1299 0.3509 0.005 1srd:B, 1srd:C, 1srd:D
9 3pu7:A 154 57 0.1301 0.1234 0.3333 0.007 3km2:A, 3km2:B, 3km2:C, 3km2:D, 3km2:E, 3km2:F, 3km2:G, 3km2:H, 3km2:I, 3km2:J, 3km2:K, 3km2:L, 3km2:M, 3km2:N, 3km2:O, 3km2:P, 3km2:Q, 3km2:R, 3km2:S, 3km2:T, 3km2:U, 3km2:V, 3km2:W, 3km2:X, 3pu7:B
10 3ce1:A 150 114 0.2397 0.2333 0.3070 0.009
11 2q2l:A 152 62 0.1438 0.1382 0.3387 0.019 2q2l:B
12 8ajp:A 199 61 0.1027 0.0754 0.2459 0.51
13 2jih:B 286 89 0.1781 0.0909 0.2921 1.1 2jih:A, 3q2g:A, 3q2g:B, 3q2h:A, 3q2h:B, 2v4b:A, 2v4b:B
14 6du7:A 448 63 0.1096 0.0357 0.2540 1.1 6du7:B, 6du7:C, 6du7:D, 6du7:E, 6du7:F, 6du7:G, 6du7:H
15 2rjq:A 292 86 0.1507 0.0753 0.2558 2.4 3b8z:A, 3b8z:B, 3hy7:A, 3hy7:B, 3hy9:A, 3hy9:B, 3hyg:A, 3hyg:B, 3ljt:A, 6yjm:A, 6yjm:B
16 8cm5:A 974 60 0.1301 0.0195 0.3167 2.6 8bqg:A, 8bqh:A, 8bqi:A, 8bqj:A, 8bqk:A, 8bql:A, 8cm4:A, 8cm4:C, 8cm5:C, 8cm5:K, 8cm5:R, 8cm6:A, 8cm6:C, 8cm7:A, 8rc8:A, 8rc9:A, 8rca:A, 8rcb:A, 8rcc:A, 8rcg:A, 6sdr:A, 6sdv:A, 7z5o:AAA
17 6fhw:B 587 65 0.1370 0.0341 0.3077 2.6 6fhw:A
18 2jlp:D 169 102 0.1712 0.1479 0.2451 3.4 2jlp:A, 2jlp:B, 2jlp:C
19 4p3w:A 172 31 0.0959 0.0814 0.4516 6.5 2brq:A, 2brq:B, 3isw:A, 3isw:B, 2jf1:A, 2mtp:A, 4p3w:B, 4p3w:E, 4p3w:F, 4p3w:D, 4p3w:C, 7sft:A, 2w0p:A, 2w0p:B
20 6fon:A 252 55 0.1027 0.0595 0.2727 9.2 1do5:A, 1do5:B, 1do5:C, 1do5:D, 6fn8:A, 6fn8:B, 6fol:A, 6fol:D, 6fol:E, 6fol:H, 6fon:C, 6fp6:B, 6fp6:D, 6fp6:F, 6fp6:H, 6fp6:J, 6fp6:L, 6fp6:N, 6fp6:P, 6fp6:R, 6fp6:T, 6fp6:V, 6fp6:X, 2rsq:A
21 1eso:A 154 113 0.2260 0.2143 0.2920 9.7

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218