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BioLiP
>protein
SPRLPKCARCRNHGYASPLKGHKRFCMWRDCQCKKCNLIAERQRVMAAQVALRRQQAQEEEL

The query sequence (length=62) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 4yj0:B 63 62 1.0000 0.9841 1.0000 3.29e-41 4yj0:A, 4yj0:C
2 1lpv:A 52 50 0.5323 0.6346 0.6600 5.47e-17
3 6d97:A 522 34 0.1613 0.0192 0.2941 0.049 6d97:B, 6d97:C, 6d97:D
4 2x3y:A 202 18 0.1935 0.0594 0.6667 3.4 5ltz:A, 5ltz:B, 5ltz:D, 5ltz:C, 5lu5:A, 5lu5:B, 5lu5:C, 5lu5:D, 5lu6:A, 5lu6:B, 5lu6:C, 5lu6:D, 5lu7:A, 5lu7:B, 5lu7:D, 5lu7:C, 8v2t:A, 8v4j:A, 2x3y:B, 2x3y:C, 2x3y:D, 2x3y:E, 2x3y:F, 2x3y:G, 2x3y:H, 2xbl:A, 2xbl:B, 2xbl:D, 2xbl:C
5 6ah0:w 443 30 0.1452 0.0203 0.3000 5.1 6ahd:w, 8ch6:J, 8h6e:2F, 8h6j:2F, 8h6k:2F, 8h6l:2F, 7qtt:J, 5z56:w, 5z57:w, 5z58:w
6 7x6f:B 150 38 0.1935 0.0800 0.3158 6.2 7x6f:C
7 8i0p:w 434 30 0.1452 0.0207 0.3000 6.9 7abh:4, 7abi:4, 7evo:C, 8hk1:C, 8i0r:w, 8i0s:w, 8i0t:w, 8i0u:w, 7onb:N, 7q3l:9, 7q4o:9, 7q4p:9, 6qx9:A3, 8r08:9, 8rm5:9, 7vpx:C, 6y50:9
8 7q8g:AA 222 21 0.1452 0.0405 0.4286 7.5 1fh0:A, 1fh0:B, 7q8d:AA, 7q8d:BA, 7q8f:BA, 7q8f:AA, 7q8g:BA, 7q8h:AA, 7q8h:BA, 7q8i:AA, 7q8i:BA, 7q8j:AA, 7q8j:BA, 7q8k:AA, 7q8k:BA, 7q8l:AA, 7q8l:BA, 7q8m:AA, 7q8m:BA, 7q8n:AA, 7q8n:BA, 7q8o:BA, 7q8o:AA, 7q8p:AA, 7q8p:BA, 7q8q:AA, 7q8q:BA, 7q9c:AA, 7q9c:BA, 7q9h:AA, 7q9h:BA, 7qff:AA, 7qff:BA, 7qfh:AA, 7qfh:BA, 7qgw:A, 7qgw:B, 7qhj:AA, 7qhj:BA, 7qhk:AA, 7qhk:BA, 7qns:AA, 7qns:BA, 7qo2:AA, 7qo2:BA
9 7zvs:A 300 36 0.1935 0.0400 0.3333 8.0 7zvs:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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