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BioLiP
>protein
SPREQDRFLPIANVSRIMKKALPANAKISKDAKETMQECVSEFISFVTGEASDKCQKEKRKTINGDDLLWAMTTLGFEDY
VEPLKVYLQRFRE

The query sequence (length=93) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6r2v:B 93 93 1.0000 1.0000 1.0000 1.47e-66 7cvo:B, 7cvq:B, 7cvq:G, 7cvq:L, 7cvq:Q
2 7c9o:B 85 85 0.8172 0.8941 0.8941 1.10e-53
3 7aw7:B 92 91 0.7204 0.7283 0.7363 3.26e-49 7aw9:B, 4g91:B, 4g92:B, 6y35:B, 6y36:B, 6y37:B, 6y39:B, 6y39:E, 6y39:H
4 4awl:B 92 91 0.7097 0.7174 0.7253 1.59e-48 7ah8:A, 7ah8:C, 6qmp:B, 6qmq:B, 6qms:B, 8qu2:B, 8qu3:B, 8qu4:B
5 1jfi:B 135 84 0.3118 0.2148 0.3452 7.97e-16
6 4wzs:B 113 74 0.2796 0.2301 0.3514 1.65e-09
7 1a7w:A 68 64 0.2258 0.3088 0.3281 7.10e-04 5t5k:A, 5t5k:B, 5t5k:C, 5t5k:D, 5t5k:E, 5t5k:F
8 8epm:A 991 47 0.1290 0.0121 0.2553 0.047
9 7xlq:A 1319 47 0.1290 0.0091 0.2553 0.047 8epl:A, 7yg5:A
10 6qmq:C 84 74 0.2366 0.2619 0.2973 0.083 7ah8:B, 7ah8:D, 4awl:C, 6qmp:C, 6qms:C, 8qu2:C, 8qu3:C, 8qu4:C
11 7aw9:C 118 73 0.2151 0.1695 0.2740 0.58 7aw7:C, 4g91:C, 4g92:C, 6y35:C, 6y36:C, 6y37:C, 6y39:C, 6y39:F, 6y39:I
12 7vfs:A 1266 47 0.1183 0.0087 0.2340 2.4 7vfu:A, 7vfv:A, 7vfw:A
13 7mix:A 1326 47 0.1183 0.0083 0.2340 2.4 7miy:A
14 8x90:A 1377 47 0.1183 0.0080 0.2340 3.5 8x91:A, 8x93:A
15 2x6b:A 287 63 0.1613 0.0523 0.2381 4.2 7n9k:A, 7n9l:A, 6o9t:A, 6o9u:A, 6o9v:A, 6o9v:B, 2x6a:A, 2x6c:A
16 5coc:A 124 55 0.2043 0.1532 0.3455 5.4
17 6en3:A 934 68 0.2043 0.0203 0.2794 5.4 8a49:C, 4nuy:A, 4nuz:A
18 4m54:A 310 25 0.1183 0.0355 0.4400 6.2
19 4mp6:A 334 25 0.1183 0.0329 0.4400 7.8 4mp8:A, 4mpd:A
20 6px9:B 207 52 0.1505 0.0676 0.2692 9.8

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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