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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
SPQESRRLSIQRCIQSLVHACQCRNANCSLPSCQKMKRVVQHTKGCKRKTNGGCPVCKQLIALCCYHAKHCQENKCPVPF
CLNIKHKLRQQQ

The query sequence (length=92) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 5hpd:A 158 92 1.0000 0.5823 1.0000 2.85e-63 2ka6:A, 2kje:A
2 5hp0:A 122 92 1.0000 0.7541 1.0000 1.20e-62
3 3t92:A 113 89 0.8913 0.7257 0.9213 1.26e-56
4 7xez:A 163 87 0.8587 0.4847 0.9080 2.17e-54 8e1d:A, 1f81:A, 2mzd:A, 7xfg:A
5 6fgs:A 130 87 0.8587 0.6077 0.9080 3.41e-54
6 6fgn:A 124 87 0.8587 0.6371 0.9080 4.53e-54
7 3io2:A 109 84 0.8370 0.7064 0.9167 2.72e-52 3p57:P
8 1ea0:A 1452 32 0.1522 0.0096 0.4375 0.018 1ea0:B
9 6s6t:A 1472 32 0.1522 0.0095 0.4375 0.018 6s6s:A, 6s6s:B, 6s6s:C, 6s6s:D, 6s6t:B, 6s6t:C, 6s6t:D, 6s6u:A, 6s6u:B, 6s6u:C, 6s6u:D, 6s6u:E, 6s6u:F, 6s6x:A, 6s6x:B, 6s6x:C, 6s6x:D, 6s6x:E, 6s6x:F, 2vdc:A, 2vdc:B, 2vdc:C, 2vdc:D, 2vdc:E, 2vdc:F
10 5hou:A 171 78 0.3043 0.1637 0.3590 0.099 2ka4:A, 1l3e:B, 1l8c:A, 7lvs:B, 2lww:A, 1p4q:B, 7qgs:A, 1r8u:B, 1u2n:A
11 3ntl:A 388 38 0.1957 0.0464 0.4737 1.8 3ntl:B
12 7b1s:B 466 13 0.1087 0.0215 0.7692 5.7 7b1s:E, 7b2c:B, 7b2c:E
13 8s91:A 602 28 0.0978 0.0150 0.3214 8.8 7dp3:A, 8s91:B, 8s91:C, 8s94:A, 8s94:C, 8s94:B
14 7wi7:A 565 28 0.0978 0.0159 0.3214 9.2

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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