Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
SPQESRRLSIQRCIQSLVHACQCRNANCSLPSCQKMKRVVQHTKGCKRKTNGGCPVCKQLIALCCYHAKHCQENKCPVPF
CLNIKHK

The query sequence (length=87) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 5hpd:A 158 87 1.0000 0.5506 1.0000 8.69e-60 2ka6:A, 2kje:A
2 5hp0:A 122 87 1.0000 0.7131 1.0000 2.70e-59
3 7xez:A 163 87 0.9080 0.4847 0.9080 1.92e-54 8e1d:A, 1f81:A, 2mzd:A, 7xfg:A
4 6fgs:A 130 87 0.9080 0.6077 0.9080 3.42e-54
5 6fgn:A 124 87 0.9080 0.6371 0.9080 4.39e-54
6 3t92:A 113 84 0.8851 0.6814 0.9167 2.42e-53
7 3io2:A 109 84 0.8851 0.7064 0.9167 2.60e-52 3p57:P
8 5hou:A 171 77 0.3218 0.1637 0.3636 0.100 2ka4:A, 1l3e:B, 1l8c:A, 7lvs:B, 2lww:A, 1p4q:B, 7qgs:A, 1r8u:B, 1u2n:A
9 1ea0:A 1452 23 0.1149 0.0069 0.4348 0.20 1ea0:B
10 6s6t:A 1472 23 0.1149 0.0068 0.4348 0.20 6s6s:A, 6s6s:B, 6s6s:C, 6s6s:D, 6s6t:B, 6s6t:C, 6s6t:D, 6s6u:A, 6s6u:B, 6s6u:C, 6s6u:D, 6s6u:E, 6s6u:F, 6s6x:A, 6s6x:B, 6s6x:C, 6s6x:D, 6s6x:E, 6s6x:F, 2vdc:A, 2vdc:B, 2vdc:C, 2vdc:D, 2vdc:E, 2vdc:F
11 3ntl:A 388 38 0.2069 0.0464 0.4737 1.1 3ntl:B
12 7b1s:B 466 13 0.1149 0.0215 0.7692 4.9 7b1s:E, 7b2c:B, 7b2c:E
13 8s91:A 602 28 0.1034 0.0150 0.3214 7.3 7dp3:A, 8s91:B, 8s91:C, 8s94:A, 8s94:C, 8s94:B
14 7wi7:A 565 28 0.1034 0.0159 0.3214 7.5
15 7t3u:A 2020 47 0.1494 0.0064 0.2766 9.9 7t3u:D

[Back]

Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218