Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
SPLMDFFHSVEGRNYGELRSLTNETYQISENVRCTFLSIQSDPFAPGSQVRLVCPCTFSLEKVLQTTDLAAANPCRRVAA
EDFILRSFHAGYRNGIPRRTSGAVQVLRPSQHVLERSTVGLVKEIEIFARVKLPGRRIDGHGAIDIFYNELVPLLEQCVV
GLNEEDLHQHVICVHDQEELRSNLLGAGYVAFVANGAILPRDAGNSDKPLRDNAVPFQSPKSLECSFTLPHSGKTITGMG
LPPGLTLIAGGGFHGKSTLLRALEVGIYNHVPDDGRTYVVVDPTAVKIRAEDRRSVHGVDISPFINNLPFGKTTNFFVTA
DASGSTSQAANIMEALELGSQLLLLDEDTCATNLMYRDALMQMLVPRAEPITPFVERVADLSQNHGVSSIMVIGGSGQYF
PQARVVLVMNAYQISDCTKEAKEIASNSSSVFIPDVNRCFDPDGSFTTVRTKVSGIGTESIRFSEETIDLSMVEQIVEEG
QVNAIAQCLALLYDGEPRIVPEMTTKGGALTQLPSPGGVCFNSNFSSMIAGCCSHQHDKRLELRTPSCYLPRGFTSATRH
IEIGAALNRLRTLRTVT

The query sequence (length=577) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 4yj1:A 600 598 0.9983 0.9600 0.9632 0.0 4yix:A, 4yiy:B, 4yiy:A
2 5d6a:A 548 579 0.3847 0.4051 0.3834 4.83e-106
3 4pj3:A 1335 65 0.0347 0.0150 0.3077 0.99 7a5p:U, 6icz:Q, 6id1:Q, 7w59:Q, 7w5a:Q, 7w5b:Q, 5xjc:Q
4 7ktr:A 3042 74 0.0416 0.0079 0.3243 2.5
5 8xvg:L 3485 74 0.0416 0.0069 0.3243 2.8 8xvv:L
6 3bnk:B 187 45 0.0243 0.0749 0.3111 3.3 3bnk:A
7 8ova:Bl 144 59 0.0312 0.1250 0.3051 4.0 8ove:Bl, 4v8m:Bl
8 7mit:E 1438 150 0.0728 0.0292 0.2800 5.5 7mjo:E, 7mjp:E, 7mjq:E, 7y1l:A
9 4oja:A 149 45 0.0225 0.0872 0.2889 8.9
10 8k1g:A 367 64 0.0347 0.0545 0.3125 9.7 8k1h:A

[Back]

Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218