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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
SPKQRVLIVGAKFGEMYLNAFMQPPEGLELVGLLAQGSARSRELAHAFGIPLYTSPEQITGMPDIACIVVRSTVAGGAGT
QLARHFLARGVHVIQEHPLHPDDISSLQTLAQEQGCCYWINTFYPHTRAGRTWLRDAQQLRRCLAKTPPVVHATTSRQLL
YSTLDLLLLALGVDTAAVECDVVGSFSDFHCLRLFWPEGEACLLLQRYLDPDDPDMHSLIMHRLLLGWPEGHLSLEASYG
PVIWSSSLFVADHQENAHSLYRRPEILRDPPGLTRSAAPLSWRDCCETVGPEGVSWLLHQLRSHLAGEHPPVACQNVHQI
ALSRLWQQILRKTGNAEIRRLTPPHHDRLAGFYN

The query sequence (length=354) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 4gmg:A 358 353 0.9774 0.9665 0.9802 0.0 4gmg:B, 4gmg:C, 4gmg:D, 5kvq:A, 5kvq:B, 5kvs:A, 5kvs:B
2 3wbb:A 297 128 0.1017 0.1212 0.2812 0.31 3wbb:B, 3wbb:C, 3wbf:A, 3wbf:B, 3wbf:C
3 5b3u:B 317 113 0.0847 0.0946 0.2655 0.74 5b3v:B, 5b3v:A, 5b3v:C, 5b3v:D
4 3ajx:A 207 75 0.0734 0.1256 0.3467 0.82 3ajx:B, 3ajx:C, 3ajx:D
5 7zi4:G 682 40 0.0424 0.0220 0.3750 1.1
6 3nd6:A 152 85 0.0480 0.1118 0.2000 1.6 3nd6:B, 3nd6:C, 3nd6:D, 3nd6:E, 3nd6:F, 3nd7:A, 3nd7:B, 3nd7:C, 3nd7:D, 3nd7:E, 3nd7:F
7 3bow:A 680 39 0.0395 0.0206 0.3590 2.6 3df0:A, 1mdw:A, 1mdw:B
8 8ayl:J 187 27 0.0395 0.0749 0.5185 2.8 8ayl:I, 8aym:I, 8aym:J, 8ayn:I, 8ayn:J, 8ayo:I, 8ayo:J
9 7x2y:A 342 84 0.0706 0.0731 0.2976 3.8 7x1x:A, 7x1x:B, 7x2y:B
10 9azo:A 315 112 0.0791 0.0889 0.2500 4.5 9azo:B, 9azo:C, 9azo:D, 9azo:E, 9azo:F
11 3dbj:A 160 59 0.0480 0.1062 0.2881 4.9 3dbj:C, 3dbj:E, 3dbj:G

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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