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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
SPGVVISDDEPGYDLDLFAIPNHYAEDLERVFIPHGLIMDRTERLARDVMKEMGGHHIVALCVLKGGYKFFADLLDYIKA
LNRNSDRSIPMTVDFIRLSTLTGKNVLIVEDIIDTGKTMQTLLSLVRQYNPKMVKVASLLVKRTPRSVGYKPDFVGFEIP
DKFVVGYALDYNEYFRDLNHVAVISETGKAKYKA

The query sequence (length=194) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 5brn:B 194 196 0.9897 0.9897 0.9796 3.59e-137 5bsk:A, 5bsk:B, 5bsk:C, 5bsk:D, 4kn6:A, 8tpy:A, 8tpy:B, 8tpy:C, 8tpy:D
2 1bzy:A 214 214 0.9897 0.8972 0.8972 7.01e-137 6bnj:A, 6bnj:B, 6bnj:C, 6bnj:D, 5brn:A, 5brn:C, 5brn:D, 1bzy:B, 1bzy:C, 1bzy:D, 1d6n:A, 1d6n:B, 3gep:A, 3gep:B, 3ggc:A, 3ggc:B, 3ggj:A, 3ggj:B, 5hia:A, 5hia:B, 5hia:C, 5hia:D, 1hmp:A, 1hmp:B, 4ijq:A, 4ijq:B, 4ijq:C, 4ijq:D, 4rab:A, 4rab:B, 4rab:C, 4rab:D, 4rac:A, 4rac:B, 4rac:C, 4rac:D, 4rad:A, 4rad:B, 4rad:C, 4rad:D, 4rad:E, 4rad:F, 4rad:G, 4rad:H, 4ran:A, 4ran:B, 4ran:C, 4ran:D, 4rao:A, 4rao:B, 4rao:C, 4rao:D, 4raq:A, 4raq:B, 4raq:C, 4raq:D, 7san:A, 7san:B, 7san:C, 7san:D, 8tpv:A, 8tpv:B, 8tpv:C, 8tpv:D, 5w8v:A, 5w8v:B, 5w8v:C, 5w8v:D
3 2vfa:B 205 201 0.7629 0.7220 0.7363 7.98e-104 2vfa:A
4 2jbh:B 213 212 0.6546 0.5962 0.5991 1.94e-86 2jbh:A
5 5ipf:A 201 196 0.4845 0.4677 0.4796 2.59e-56 5ipf:B, 5ipf:C, 5ipf:D
6 3ozf:B 234 212 0.4794 0.3974 0.4387 5.62e-54 1cjb:A, 1cjb:B, 1cjb:C, 1cjb:D, 3ozf:A, 3ozf:C, 3ozf:D, 3ozg:A, 3ozg:B, 3ozg:C, 3ozg:D, 7tux:A, 7tux:B, 7tux:C, 7tux:D
7 6bo7:A 220 203 0.4278 0.3773 0.4089 3.37e-50 6bo7:B, 6bo7:C, 6bo7:D, 6bo7:E, 6bo7:F, 6bo7:G, 6bo7:H, 6bo7:I, 6bo7:J, 6bo7:K, 6bo7:L
8 1fsg:A 233 207 0.3918 0.3262 0.3671 1.02e-39 1dbr:A, 1dbr:B, 1dbr:D, 1fsg:C, 1qk3:A, 1qk3:B, 1qk3:C, 1qk3:D, 1qk4:A, 1qk4:B, 1qk4:C, 1qk4:D, 1qk5:A, 1qk5:B
9 6igs:B 167 167 0.3093 0.3593 0.3593 4.88e-31 6igs:A, 6igs:C, 6igs:D
10 4qyi:B 171 178 0.2990 0.3392 0.3258 1.05e-25 4qyi:A, 4qyi:C, 4qyi:D, 4qyi:E
11 4pfq:C 184 177 0.3144 0.3315 0.3446 2.38e-25 4pfq:A, 4pfq:B, 4pfq:D, 4pfq:E, 4pfq:F, 4pfq:G, 4pfq:H
12 3kb8:A 201 179 0.3196 0.3085 0.3464 4.37e-25 6d9r:A, 6d9r:B, 6d9s:A, 6d9s:B, 3h83:A, 3h83:B, 3kb8:B
13 6mxc:C 220 152 0.2887 0.2545 0.3684 1.00e-24 6aqo:A, 6aqo:B, 6aqo:C, 6aqo:D, 6aqo:E, 6aqo:F, 6ar9:A, 6ar9:B, 6ar9:C, 6ar9:D, 6ar9:E, 6ar9:F, 6mxb:A, 6mxb:B, 6mxb:C, 6mxb:D, 6mxb:E, 6mxb:F, 6mxc:A, 6mxc:B, 6mxc:D, 6mxc:E, 6mxc:F, 6mxd:A, 6mxd:B, 6mxd:C, 6mxd:D, 7scr:A, 7scr:C, 7scr:B, 7scr:D, 7scr:E, 7scr:F
14 2geb:A 184 180 0.2938 0.3098 0.3167 5.58e-23 1r3u:A, 1r3u:B, 1yfz:A, 1yfz:B
15 3acc:A 166 156 0.2784 0.3253 0.3462 5.92e-23 3acd:A
16 5knx:B 176 165 0.2835 0.3125 0.3333 7.54e-23 1g9s:A, 1g9s:B, 1g9t:A, 1g9t:B, 1grv:B, 1grv:A, 1j7j:A, 1j7j:B, 5knr:A, 5knr:B, 5kns:A, 5kns:B, 5knt:A, 5knt:B, 5knu:A, 5knu:B, 5knv:A, 5knv:B, 5knx:A
17 8fx3:B 223 158 0.2732 0.2377 0.3354 1.10e-22 8fwy:A, 8fwy:B, 8fwz:A, 8fwz:B, 8fx0:A, 8fx0:B, 8fx1:A, 8fx1:B, 8fx2:A, 8fx2:B, 8fx3:A
18 1hgx:A 164 172 0.2732 0.3232 0.3081 7.33e-20
19 6aps:A 185 127 0.2062 0.2162 0.3150 4.08e-19 6aps:B, 6apt:A, 6apt:B, 6apu:A, 6apu:B, 6apv:A, 6apv:B, 6apv:C, 6apv:D, 5jsq:A, 5jsq:B, 5jv5:A, 5jv5:B, 5k51:A, 5k51:B, 5k51:C, 5k51:D, 5kam:A, 5kam:C, 5kap:A, 5kap:B, 6mxg:A, 6mxg:B, 7sb7:A, 7sb7:B, 8tr1:A, 8tr1:B, 8tr1:C, 8tr1:D, 8ts4:A, 8ts4:B
20 1p17:B 204 195 0.3041 0.2892 0.3026 4.58e-19 1i0i:A, 1i0i:B, 1i0l:A, 1i0l:B, 1i13:A, 1i13:B, 1i14:A, 1i14:B, 1p17:A, 1p17:C, 1p17:D, 1p18:A, 1p18:B, 1p19:A, 1p19:B, 1p19:C, 1p19:D, 1tc1:A, 1tc1:B, 1tc2:A, 1tc2:B
21 5kny:B 187 189 0.2680 0.2781 0.2751 1.16e-17 5knp:A, 5knp:B, 5knp:C, 5knp:D, 5knq:A, 5knq:B, 5knq:C, 5knq:D, 5kny:A, 5kny:C, 5kny:D, 4rht:A, 4rht:B, 4rht:C, 4rht:D, 4rhu:A, 4rhu:B, 4rhu:C, 4rhu:D, 4rhu:E, 4rhu:F, 4rhx:A, 4rhx:B, 4rhx:C, 4rhx:D, 4rhy:A, 4rhy:B, 4rhy:C, 4rhy:D
22 7cmj:A 184 146 0.2371 0.2500 0.3151 3.82e-17 1pzm:A, 1pzm:B
23 5esw:A 190 148 0.2268 0.2316 0.2973 6.93e-14 5esx:A, 5esx:B
24 4zfn:B 177 84 0.1392 0.1525 0.3214 1.79e-06 5bqp:A, 5bqp:B, 5bqp:C, 5bqp:D, 4z1o:A, 4z1o:B, 4zfn:A
25 2igb:B 173 61 0.1031 0.1156 0.3279 0.005 2igb:A, 4p83:A, 4p83:B, 4p83:C, 4p83:D, 1xz8:A, 1xz8:B, 1xzn:A, 1xzn:B
26 4trb:B 209 75 0.1289 0.1196 0.3333 0.033 4trc:A, 4trc:B, 4ts5:A, 4ts5:B, 4ts7:A, 4ts7:B
27 7kl6:A 147 101 0.1289 0.1701 0.2475 0.041
28 4p86:A 177 61 0.0979 0.1073 0.3115 0.063 4p86:B, 4p86:C, 4p86:D
29 7rmw:A 270 49 0.0722 0.0519 0.2857 0.087 1p4a:A, 1p4a:B, 1p4a:C, 1p4a:D, 7rmw:B, 7rmw:C, 7rmw:F
30 5hkl:A 168 50 0.0876 0.1012 0.3400 0.12 5hkf:A
31 5hkf:B 166 50 0.0876 0.1024 0.3400 0.13
32 3mbi:A 287 86 0.1443 0.0976 0.3256 0.16 3lpn:A, 3lpn:B, 3lrt:A, 3lrt:B, 3mbi:C, 3mbi:B, 3mbi:D, 3nag:A, 3nag:B
33 2jky:A 207 62 0.1031 0.0966 0.3226 0.46 2jky:B, 2jkz:A, 2jkz:B, 2jkz:C, 2jkz:D, 2xbu:A, 2xbu:B
34 5vog:A 176 87 0.1392 0.1534 0.3103 0.51
35 1u9z:A 274 36 0.0722 0.0511 0.3889 0.59 1u9z:B, 1u9z:C, 1u9z:D
36 5znq:A 183 35 0.0619 0.0656 0.3429 1.1 5b6h:A, 5y07:A, 5y07:B, 5zc7:A, 5zc7:B, 5zmi:A, 5znq:B, 5zoc:A
37 4twb:A 278 57 0.1186 0.0827 0.4035 1.2 4twb:B, 4twb:C, 4twb:D, 4twb:E, 4twb:F
38 1ecf:B 500 35 0.0722 0.0280 0.4000 1.6 6czf:A, 6czf:C, 6czf:B, 6czf:D, 1ecb:A, 1ecb:B, 1ecb:C, 1ecb:D, 1ecc:A, 1ecc:B, 1ecf:A, 1ecg:A, 1ecg:B, 1ecj:A, 1ecj:C, 6ott:A, 6ott:B, 8w7d:A, 8w7d:B, 8w7d:C, 8w7d:D
39 4rv4:B 211 39 0.0567 0.0521 0.2821 2.0 4rv4:A, 4rv4:C
40 1pv9:B 318 57 0.0876 0.0535 0.2982 2.4
41 4m0k:C 176 53 0.0928 0.1023 0.3396 3.7 4m0k:A, 4m0k:B, 4m0k:D
42 5lnx:D 374 75 0.1031 0.0535 0.2667 3.9 5lnx:A, 5lnx:B, 5lnx:C, 5lnx:E, 5lnx:F, 5lnx:G, 5lnx:H
43 8izj:B 183 38 0.0567 0.0601 0.2895 4.3 8izj:A, 7y94:A, 7y94:B
44 5kwi:A 283 52 0.0979 0.0671 0.3654 4.7 5kwj:A, 5kwj:B, 5ocj:A, 5ocj:B, 4qe3:A, 4qek:A, 5vns:A
45 3g6w:A 215 36 0.0670 0.0605 0.3611 4.8 3g6w:B, 3g6w:D, 3g6w:C, 1vst:A, 1xtt:A, 1xtt:B, 1xtt:C, 1xtt:D, 1xtu:A, 1xtu:H, 1xtu:B, 1xtu:C, 1xtu:F, 1xtu:G, 1xtu:D, 1xtu:E, 1xtv:A, 1xtv:C, 1xtv:E, 1xtv:G
46 8tux:m 448 51 0.0825 0.0357 0.3137 4.8 8tux:M
47 7emo:A 186 34 0.0567 0.0591 0.3235 5.2 3ell:A, 3ell:B, 7emo:B, 7emo:C, 7emp:A, 7emp:B, 7emp:C, 7emq:A, 7emq:B, 7emq:C, 7emr:A, 7emr:B, 7emr:C, 7ems:A, 7ems:B, 7ems:C, 7emt:A, 7emu:A, 7emv:A, 7emw:A, 5iqx:A, 6jlg:A, 6jlg:E, 6jlg:B, 6jlg:C, 6jlg:D, 6jlg:F, 6jlg:G, 6jlg:H, 3mol:A, 3mol:B, 3mom:A, 3mom:B, 4o6q:A, 4o6s:A, 4o6t:A, 4o6u:A, 6u87:A, 6urb:A, 6urb:B, 7vf7:A, 7vf7:B, 7vf7:C, 7vf8:A, 7vf8:B, 7vm1:A, 7vm1:B, 7vm1:C, 7vm1:D, 3w8m:A, 3w8o:A, 3w8o:B, 3wah:A, 3wah:B, 5xa4:A, 5xa4:B, 5xhl:A, 5xhl:B, 5xib:A, 5xib:B, 5xic:A, 5xic:B, 5xic:C, 5xic:D, 5xie:A, 5xie:B, 5xkb:A, 5xkb:B
48 3hzh:A 134 42 0.0722 0.1045 0.3333 6.6
49 4d5y:N 204 63 0.1082 0.1029 0.3333 8.0 7a01:12, 8a3d:l, 5aj0:AN, 8b5l:N, 8b6c:N, 9bdl:AL15, 9bdn:AL15, 9bdp:AL15, 7bhp:LN, 8bhf:A1, 8bpo:M2, 8btk:BN, 7cpu:LN, 7cpv:LN, 4d67:N, 6d90:N, 6d9j:N, 9f1b:BN, 9f1c:BN, 9f1d:BN, 7f5s:LN, 8fl2:L9, 8fl3:L9, 8fl4:L9, 8fl6:L9, 8fl7:L9, 8fl9:L9, 8fla:L9, 8flb:L9, 8flc:L9, 8fld:L9, 8fle:L9, 8flf:L9, 6frk:N, 6ftg:N, 6fti:N, 6ftj:N, 8g5y:LN, 8g5z:LN, 8g60:LN, 8g61:LN, 8g6j:LN, 8glp:LN, 6gz3:AN, 6gz4:AN, 6gz5:AN, 6hcf:N3, 6hcj:N3, 6hcm:N3, 6hcq:N3, 8idt:U, 8idy:U, 8ie3:U, 8ifd:2H, 8ife:2H, 8ine:U, 8inf:U, 8ink:U, 6ip5:2H, 6ip6:2H, 6ip8:2H, 8ipd:U, 8ipx:U, 8ipy:U, 8ir3:U, 3j7o:N, 3j7p:N, 3j7q:N, 3j7r:N, 3j92:N, 3jag:N, 3jah:N, 3jai:N, 3jaj:N, 3jan:N, 8jdj:S, 8jdk:S, 8jdl:S, 8jdm:S, 8k2c:LN, 5lks:LN, 6lqm:U, 6lsr:U, 6lss:U, 7ls1:H1, 7ls2:H1, 6lu8:U, 5lzs:N, 5lzt:N, 5lzu:N, 5lzv:N, 5lzw:N, 5lzx:N, 5lzy:N, 5lzz:N, 7mdz:N, 6mtb:N, 6mtc:N, 6mtd:N, 6mte:N, 7nfx:N, 7nwg:N3, 7nwh:N, 7nwi:N, 7o7y:BN, 7o7z:BN, 7o80:BN, 7o81:BN, 7obr:N, 8ohd:LN, 8oj0:LN, 8oj5:LN, 8oj8:LN, 6ole:O, 6olf:O, 6olg:AN, 6oli:O, 6olz:AN, 6om0:O, 6om7:O, 7ow7:t, 7oya:N1, 7oyb:N1, 7oyc:N1, 7oyd:N, 8p2k:BN, 6p5i:AN, 6p5j:AN, 6p5k:AN, 6p5n:AN, 8q7z:BN, 8q87:BN, 8qfd:N, 7qgg:O, 8qoi:LN, 7qvp:MN, 7qvp:LN, 7qwq:N, 7qwr:N, 7qws:N, 6qzp:LN, 6r5q:N, 6r6g:N, 6r6p:N, 6r7q:N, 8rjb:N, 8rjc:N, 8rjd:N, 8scb:N, 6sgc:N2, 6swa:M, 5t2c:t, 6t59:N3, 7tm3:N, 7toq:AL15, 7tor:AL15, 7tut:N, 7ucj:N, 7uck:N, 4ug0:LN, 4ujc:BN, 4ujd:AN, 4uje:CN, 4v5z:Bm, 4v6x:CN, 6w6l:O, 6xa1:LN, 7xnx:LN, 7xny:LN, 8xsx:LN, 8xsy:LN, 8xsz:LN, 6y0g:LN, 8y0w:LN, 8y0x:LN, 6y2l:LN, 6y57:LN, 6y6x:LN, 8yoo:LN, 8yop:LN, 6z6l:LN, 6z6m:LN, 6z6n:LN, 7zjw:LQ, 7zjx:LQ, 6zm7:LN, 6zme:LN, 6zmi:LN, 6zmo:LN, 6zvk:12
50 4paw:A 197 114 0.1237 0.1218 0.2105 8.0 4paw:B
51 6lbp:A 460 64 0.0928 0.0391 0.2812 8.7 6lbp:B
52 7l7b:D 1148 53 0.1031 0.0174 0.3774 9.1

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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