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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
SPFSVKVGLAQMLRGGVIMDVVNAEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQMIKEIKQAVTIPVMAKARI
GHFVEAQILEAIGIDYIDESEVLTLADEDHHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHV
RSVNGDIRVLRNMDDDEVFTFAKKLAAPYDLVMQTKQLGRLPVVQFAAGGVATPADAALMMQLGCDGVFVGSGIFKSGDP
ARRARAIVQAVTHYSDPEMLVEVSCGLGEAMVGINLN

The query sequence (length=277) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 5k2z:B 278 277 1.0000 0.9964 1.0000 0.0 5k2z:A, 5k2z:C, 5k2z:D, 5lnr:A, 5lnr:B, 5lnr:C, 5lnr:D, 5lns:A, 5lns:B, 5lns:C, 5lns:D, 5lnt:A, 5lnt:B, 5lnt:C, 5lnt:D, 5lnu:A, 5lnu:B, 5lnu:C, 5lnu:D, 5lnv:A, 5lnv:B, 5lnv:C, 5lnv:D, 5lnw:A, 5lnw:B, 5lnw:C, 5lnw:D, 7nhe:A, 7nhe:B, 7nhe:C, 7nhe:D
2 4jdy:A 264 260 0.6534 0.6856 0.6962 2.20e-130 4jdy:B, 4jdy:C
3 2iss:B 285 273 0.6354 0.6175 0.6447 1.17e-128 2iss:A, 2iss:C
4 4ads:A 282 269 0.6173 0.6064 0.6357 4.43e-128 4ads:B, 4ads:C, 4ads:D, 4ads:E, 4ads:F, 4adt:A, 4adt:B, 4adu:A, 4adu:B
5 8u7j:L 267 266 0.6462 0.6704 0.6729 6.16e-128 8u7j:K, 8u7j:I, 8u9e:B
6 4wy0:B 260 264 0.6390 0.6808 0.6705 1.24e-125 4wy0:D, 4wy0:E, 4wy0:G, 4wy0:I, 4wy0:J, 4wy0:K, 1znn:A, 1znn:B, 1znn:C, 1znn:D, 1znn:E, 1znn:F
7 3o05:A 261 261 0.6029 0.6398 0.6398 3.02e-123 3o05:B, 3o05:C
8 4fir:A 333 306 0.6643 0.5526 0.6013 2.13e-121 4fir:B, 4fir:C, 4fir:D, 4fir:E, 4fir:F
9 1tyg:A 242 64 0.0866 0.0992 0.3750 1.89e-04 1tyg:C
10 5z9y:B 234 52 0.0758 0.0897 0.4038 0.012 5z9y:A
11 3qh2:B 196 55 0.0830 0.1173 0.4182 0.059 3qh2:A, 3qh2:C, 3qh2:D
12 5csr:C 220 40 0.0469 0.0591 0.3250 0.32 5csr:A, 5csr:B, 5csr:D, 5css:A, 5css:B, 5css:C, 5css:D
13 4muz:A 212 22 0.0433 0.0566 0.5455 0.57 4muz:B
14 3w9z:A 290 181 0.1805 0.1724 0.2762 0.71
15 3t44:A 259 38 0.0578 0.0618 0.4211 0.72 3t40:A, 3t55:A, 3t78:A
16 2v82:A 205 49 0.0686 0.0927 0.3878 1.2
17 7qep:S0 203 77 0.0866 0.1182 0.3117 1.2
18 4bf9:A 318 92 0.1083 0.0943 0.3261 1.3 4bfa:A, 4bfa:B, 4yco:A, 4yco:B, 4yco:C, 4ycp:A
19 1hg3:A 224 51 0.0578 0.0714 0.3137 1.5 1hg3:B, 1hg3:C, 1hg3:D, 1hg3:E, 1hg3:F, 1hg3:G, 1hg3:H
20 2pul:A 381 46 0.0505 0.0367 0.3043 2.5 2olc:A, 2olc:B, 2pui:A, 2pui:B, 2pul:B, 2pun:A, 2pun:B, 2pup:A, 2pup:B
21 3a59:A 141 39 0.0397 0.0780 0.2821 3.3 3a59:C, 3a59:E, 3a59:G, 3fs4:A, 3fs4:C
22 8qpl:A 331 61 0.0614 0.0514 0.2787 3.8 8qpl:B
23 5ey5:A 261 45 0.0614 0.0651 0.3778 4.3 5ey5:C
24 4jej:A 241 36 0.0578 0.0664 0.4444 4.5
25 8u0z:A 260 50 0.0722 0.0769 0.4000 4.6 8u0z:B
26 1g69:B 228 54 0.0686 0.0833 0.3519 5.0 1g4p:A, 1g4p:B, 1g4s:A, 1g4s:B, 1g4t:A, 1g4t:B, 1g67:A, 1g67:B, 1g69:A, 1g6c:A, 1g6c:B, 3o15:A, 2tps:A, 2tps:B
27 4z38:B 439 43 0.0578 0.0364 0.3721 5.7 4z38:A
28 5yij:A 959 78 0.0650 0.0188 0.2308 6.0 5ysi:A
29 2qjg:A 272 106 0.1011 0.1029 0.2642 6.4 2qjg:B, 2qjg:C, 2qjg:D, 2qjg:E, 2qjg:K, 2qjg:L, 2qjg:M, 2qjg:N, 2qjg:O, 2qjg:F, 2qjg:G, 2qjg:H, 2qjg:I, 2qjg:J, 2qjg:P, 2qjg:Q, 2qjg:R, 2qjg:S, 2qjg:T
30 4q4k:A 351 72 0.0830 0.0655 0.3194 6.9 4q4k:B, 4qis:A, 4qis:B, 4qit:A, 4qit:B, 4qiu:A, 4qiu:B
31 1ox4:B 538 61 0.0650 0.0335 0.2951 7.2 1jvn:B, 1ox4:A, 1ox5:A, 1ox5:B, 1ox6:B
32 4cw7:A 181 26 0.0469 0.0718 0.5000 9.5 4cvn:A, 4cvn:B, 4cvn:C, 4cvn:D, 4cw7:C, 4cw7:E, 4cw7:G
33 1a4f:A 141 39 0.0361 0.0709 0.2564 9.6 1c40:A, 3eok:A, 1faw:A, 1faw:C, 1hv4:A, 1hv4:C, 1hv4:E, 1hv4:G

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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