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BioLiP
>protein
SPEEAAHQKAVVETLLQEDPWRVAKMVKSYLQQHNIPQREVVDTTGLNQSHLSQHLNKGTPMKTQKRAALYTWYVRKQRE
VAQQFTHARRNRFKWGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANR
RKEEA

The query sequence (length=165) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 8pi9:B 177 168 0.9939 0.9266 0.9762 2.61e-119 1ic8:A, 1ic8:B, 8pi7:A, 8pi7:B, 8pi8:A, 8pi8:B, 8pi9:A, 8pia:A, 8pia:B
2 2h8r:A 176 165 0.8485 0.7955 0.8485 2.25e-104 2h8r:B
3 4j19:A 77 73 0.1515 0.3247 0.3425 1.25e-04 4j19:B
4 8x7u:D 654 59 0.1091 0.0275 0.3051 2.5 8x7u:E, 8x7u:C, 8x7u:B, 8x7u:F, 8x7u:A
5 3wcc:C 342 38 0.0727 0.0351 0.3158 4.0 3wca:A, 3wca:B, 3wca:C, 3wca:D, 3wcb:A, 3wcb:B, 3wcb:D, 3wcc:A, 3wcc:B, 3wcc:D, 3wce:A, 3wce:B, 3wce:C, 3wce:D, 3wcg:A, 3wcg:B, 3wcg:C, 3wcg:D, 3wsb:A, 3wsb:B, 3wsb:C, 3wsb:D
6 1fjl:A 65 73 0.1212 0.3077 0.2740 5.0 1fjl:B, 1fjl:C

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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