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BioLiP
>protein
SPADAVGQIRQNATQVLTILKSGDAASARPKAEAYAVPYFDFQRMTALAVGNPWRTASDAQKQALAKEFQTLLIRTYSGT
MLKFKNATVNVKDNPIVNKGGKEIVVRAEVGIPGQKPVNMDFTTYQSGGKYRTYNVAIEGTSLVTVYRNQFGEIIKAKGI
DGLIAELKAKNG

The query sequence (length=172) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 8dte:A 172 172 1.0000 1.0000 1.0000 1.02e-125
2 5uwa:A 185 138 0.2442 0.2270 0.3043 2.58e-15 5uwa:B
3 3b6u:B 343 106 0.1512 0.0758 0.2453 1.6 3b6u:A
4 4kwh:B 257 38 0.0872 0.0584 0.3947 2.8 4kwh:A, 4kwi:A, 4kwi:B, 4oso:A, 4oso:B
5 4zgf:A 141 32 0.0756 0.0922 0.4062 6.4

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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