Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
SNVSADLIWEVSRNYNSFLVKQRTGTFSRDALNLTNQHSRKHAGFVNDKALGIVPAEKGVKVIAKKVKAANKPASSLYTV
TYKSTARKAYKAIASQAAKHGYRADLRQAAVARASAILRSQRPVKPEPPKKLRGAAARR

The query sequence (length=139) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7olc:Lq 141 139 1.0000 0.9858 1.0000 2.32e-98 8i9w:CV, 8i9x:CV, 8i9y:CV, 8i9z:CV, 8ia0:CV, 7old:Lq, 8oo0:Lq, 8pv1:Lq, 8pv2:Lq, 8pv3:Lq, 8pv4:Lq, 8pv5:Lq, 8pv6:Lq, 8pv7:Lq, 8pv8:Lq, 8pvk:Lq, 8pvl:Lq, 7z3n:Lq, 7z3o:Lq
2 7r81:s1 149 140 0.6763 0.6309 0.6714 2.77e-55
3 8q7z:Br 126 123 0.3813 0.4206 0.4309 7.91e-25 8q87:Br
4 4v6x:Cr 137 124 0.3813 0.3869 0.4274 1.15e-24 7a01:J2, 8a3d:k, 5aj0:At, 8b5l:r, 8b6c:r, 9bdl:ALNW, 9bdn:ALNW, 9bdp:ALNW, 7bhp:Lr, 8bhf:d1, 8bpo:p2, 8btk:Br, 7cpu:Lr, 7cpv:Lr, 4d5y:t, 4d67:t, 6d90:r, 6d9j:r, 9f1b:Br, 9f1c:Br, 9f1d:Br, 7f5s:Lr, 8fkq:LL, 8fks:LL, 8fku:LL, 8fkw:LL, 8fkx:LL, 8fky:LL, 8fkz:LL, 8fl0:LL, 8fl2:LL, 8fl3:LL, 8fl4:LL, 8fl6:LL, 8fl7:LL, 8fl9:LL, 8fla:LL, 8flb:LL, 8flc:LL, 8fld:LL, 8fle:LL, 8flf:LL, 9fpz:Lr, 9fq0:Lr, 6frk:3, 6ftg:r, 6fti:r, 6ftj:r, 8g5y:Lr, 8g5z:Lr, 8g60:Lr, 8g61:Lr, 8g6j:Lr, 8glp:Lr, 6gz3:At, 6gz4:At, 6gz5:At, 6hcf:r3, 6hcj:r3, 6hcm:r3, 6hcq:r3, 8idt:l, 8idy:l, 8ie3:l, 8ifd:2k, 8ife:2k, 8ine:l, 8inf:l, 8ink:l, 6ip5:2k, 6ip6:2k, 6ip8:2k, 8ipd:l, 8ipx:l, 8ipy:l, 8ir1:l, 8ir3:l, 3j7o:r, 3j7p:r, 3j7q:r, 3j7r:r, 3j92:r, 3jag:r, 3jah:r, 3jai:r, 3jaj:r, 3jan:r, 8jdj:v, 8jdk:v, 8jdl:v, 8jdm:v, 8k2c:Lr, 5lks:Lr, 6lqm:l, 6lsr:l, 6lss:l, 7ls1:k2, 7ls2:k2, 6lu8:l, 5lzs:r, 5lzt:r, 5lzu:r, 5lzv:r, 5lzw:r, 5lzx:r, 5lzy:r, 5lzz:r, 7mdz:r, 6mtb:r, 6mtc:r, 6mtd:r, 6mte:r, 7nfx:r, 7nwg:r3, 7nwh:r, 7nwi:r, 7o7y:Br, 7o7z:Br, 7o80:Br, 7o81:Br, 7obr:r, 8ohd:Lr, 8oj0:Lr, 8oj5:Lr, 8oj8:Lr, 6ole:r, 6olf:r, 6olg:At, 6oli:r, 6olz:At, 6om0:r, 6om7:r, 7ow7:k, 7oyd:r, 8p2k:Br, 6p5i:Ar, 6p5j:Ar, 6p5k:Ar, 6p5n:Ar, 8qfd:r, 7qgg:r, 8qoi:Lr, 7qvp:Lr, 7qvp:Mr, 7qwq:r, 7qwr:r, 7qws:r, 6qzp:Lr, 6r5q:r, 6r6g:r, 6r6p:r, 6r7q:r, 8rjb:r, 8rjc:r, 8rjd:r, 8scb:r, 6sgc:r2, 6swa:p, 5t2c:k, 6t59:r3, 7tm3:r, 7toq:EL28, 7tor:ALNW, 7tut:r, 7ucj:r, 7uck:r, 4ug0:Lr, 4ujc:Bt, 4ujd:At, 4uje:Ct, 6w6l:r, 6xa1:Lr, 7xnx:Lr, 7xny:Lr, 8xsx:Lr, 8xsy:Lr, 8xsz:Lr, 6y0g:Lr, 8y0w:Lr, 8y0x:Lr, 6y2l:Lr, 6y57:Lr, 6y6x:Lr, 8yoo:Lr, 8yop:Lr, 6z6l:Lr, 6z6m:Lr, 6z6n:Lr, 7zjw:Ls, 7zjx:Ls, 6zm7:Lr, 6zme:Lr, 6zmi:Lr, 6zmo:Lr, 6zvk:J2
5 4v6w:Cr 134 125 0.3669 0.3806 0.4080 3.35e-22 6xu6:Cr, 6xu7:Cr, 6xu8:Cr
6 8azw:N 142 142 0.4029 0.3944 0.3944 3.03e-21 8b2l:N3, 7qiw:r, 7qiz:r
7 7oyc:r1 118 118 0.3309 0.3898 0.3898 7.20e-19
8 7oya:r1 118 117 0.3309 0.3898 0.3932 7.73e-18 7oyb:r1
9 8ip8:QA 142 128 0.3094 0.3028 0.3359 3.67e-17 8ipa:QA, 8ipb:QA, 8jiv:Cr
10 5t2a:a 146 115 0.2374 0.2260 0.2870 1.05e-06 8a3w:Z, 8a98:Z, 6az3:Z, 8ovj:Z, 8rxh:LZ, 8rxx:LZ
11 5t5h:c 120 90 0.2158 0.2500 0.3333 1.27e-06
12 5xxb:p 122 123 0.2230 0.2541 0.2520 2.57e-06
13 3jcs:Z 79 57 0.1439 0.2532 0.3509 2.80e-05
14 4v8p:AO 134 41 0.1007 0.1045 0.3415 0.001 4v8p:DO, 4v8p:FO, 4v8p:HO
15 4v3p:Lb 73 55 0.1439 0.2740 0.3636 0.003 4v7e:Cr
16 3j79:2 104 49 0.1295 0.1731 0.3673 0.004 3jbn:A2, 3jbo:A2, 3jbp:A2, 8tpu:A2, 5umd:2
17 8ova:Bc 144 112 0.2302 0.2222 0.2857 0.007 8ove:Bc, 4v8m:Bc
18 6rxu:UT 2033 125 0.2374 0.0162 0.2640 0.092 6rxv:UT, 6rxx:UT, 6rxz:UT
19 4exo:A 146 91 0.1871 0.1781 0.2857 1.4
20 4y0h:D 463 69 0.1583 0.0475 0.3188 2.6 6b6g:A, 6b6g:B, 6b6g:C, 6b6g:D, 1ohv:A, 1ohv:B, 1ohv:C, 1ohv:D, 1ohw:A, 1ohw:B, 1ohw:C, 1ohw:D, 1ohy:A, 1ohy:B, 1ohy:C, 1ohy:D, 4y0d:A, 4y0d:B, 4y0d:C, 4y0d:D, 4y0h:A, 4y0h:B, 4y0h:C, 4y0i:A, 4y0i:B, 4y0i:C, 4y0i:D, 4zsw:A, 4zsw:B, 4zsw:C, 4zsw:D, 4zsy:A, 4zsy:B, 4zsy:C, 4zsy:D
21 5ol2:A 331 125 0.2086 0.0876 0.2320 2.6 5ol2:D
22 4cdp:A 333 39 0.1079 0.0450 0.3846 2.7
23 4xwh:A 720 73 0.1583 0.0306 0.3014 4.3

[Back]
Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218