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BioLiP
>protein
SNVRVLATDLAFPEGPVVMPDGSVVLVEIRAQQLTRVWPDGRKEVVAKVPGGPNGAALGPDGKMYICNNGGFGWMPGAPA
PHEYIGGSIQRVDLQSGEVETLFDKCGEHPLKGPNDLVFDKHGGLWFTDLGKRRARDMDVGAAYYIKPGMTEITEQVFGT
LPLNGIGLSPDEATMYAAETPTGRLWAFDLSGPGEVKPKGKPICGLGGYQMFDSLAVEASGNVCVATLVSGCISVIAPDG
TLVEQVPTGDRVTTNIAFGGPDLKTAYITLSGKGELIAMDWSRPGLPLNFLNK

The query sequence (length=293) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7riz:A 306 306 0.9932 0.9510 0.9510 0.0 8djf:A, 8djz:A, 8dk0:A, 7ris:A
2 2dso:C 323 239 0.2082 0.1889 0.2552 3.23e-13 2dg1:A, 2dg1:B, 2dg1:C, 2dg1:D, 2dg1:E, 2dg1:F, 2dso:A, 2dso:B, 2dso:D, 2dso:E, 2dso:F
3 3e5z:A 290 284 0.2355 0.2379 0.2430 5.47e-11 3e5z:B
4 7plb:B 289 162 0.1570 0.1592 0.2840 3.00e-08 7plb:A, 7plc:A, 7plc:D, 7plc:B, 7plc:C, 7pld:A, 7pld:B
5 3o4p:A 314 191 0.1706 0.1592 0.2618 3.67e-08 3byc:A, 1e1a:A, 2gvu:A, 2gvv:A, 2gvw:A, 2gvx:A, 3hlh:A, 3hlh:B, 3hlh:C, 3hlh:D, 3hli:A, 3hli:B, 3hli:C, 3hli:D, 2iao:A, 2iap:A, 2iaq:A, 2iar:A, 2ias:A, 2iat:A, 2iau:A, 2iav:A, 2iaw:A, 2iax:A, 3kgg:A, 3li3:A, 3li4:A, 3li5:A, 1pjx:A
6 3dr2:A 299 153 0.1331 0.1304 0.2549 1.35e-06 3dr2:B
7 4o5t:B 326 116 0.1058 0.0951 0.2672 7.35e-04 4o5t:A, 7zp7:A, 7zp7:B
8 5d9b:A 307 114 0.0990 0.0945 0.2544 0.002 5d9c:A, 5d9d:A, 5gtq:A, 5gx1:A, 5gx2:A, 5gx3:A, 5gx4:A, 5gx5:A, 5xfe:A
9 4gn7:A 297 137 0.1092 0.1077 0.2336 0.067 4gn7:B, 4gn8:A, 4gn8:B, 4gn9:A, 4gn9:B, 4gna:A, 4gna:B
10 1b8g:B 425 124 0.0922 0.0635 0.2177 0.33 1b8g:A, 1m4n:A, 1m7y:A, 3piu:A, 1ynu:A
11 4gnc:A 298 137 0.1092 0.1074 0.2336 0.47 3g4e:A, 3g4e:B, 3g4h:B, 3g4h:A, 4gnb:A, 4gnb:B, 4gnc:B
12 1m32:B 362 89 0.0990 0.0801 0.3258 0.88 1m32:A, 1m32:C, 1m32:D, 1m32:E, 1m32:F
13 6s5m:A 306 76 0.0922 0.0882 0.3553 0.89 6s5j:A, 6s5q:A, 6s5u:A, 6s5u:C, 6s5u:B, 6s5u:D, 6s5u:E, 6s5u:F
14 5c2v:B 352 64 0.0648 0.0540 0.2969 2.6 5c2v:E, 5c2w:B, 5c2w:E
15 5t99:A 757 64 0.0614 0.0238 0.2812 3.2 5t99:B
16 6i1t:A 405 71 0.0683 0.0494 0.2817 3.7 6h7t:A, 6i1q:A
17 7fh6:A 653 164 0.1365 0.0613 0.2439 5.6 7fh7:A, 7fh8:A, 7ron:A, 7roo:A
18 4a9v:A 581 72 0.0785 0.0396 0.3194 8.0 4a9x:A, 4alf:A, 4alf:B, 4amf:A, 4amf:B, 3zwu:A, 3zwu:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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